PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00011.1.g04160.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 299aa    MW: 33097.2 Da    PI: 10.0996
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00011.1.g04160.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.4e-092974347
                                    SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47
                                     WT+ E + + +a + l  +  +W+++a+ ++ gRt  +++s+++++
  Zjn_sc00011.1.g04160.1.am.mkhc 29 VWTAKENKEFERALAALDLRrpDWEKVAQAIP-GRTVDEVVSHFRSL 74
                                    6*****************99************.***********975 PP
2Myb_DNA-binding45.12.3e-14146190347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     +WT+eE+ l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Zjn_sc00011.1.g04160.1.am.mkhc 146 PWTEEEHRLFLLGLKKYGKGDWRNISRNFVHTRTPTQVASHAQKY 190
                                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.2112579IPR017884SANT domain
SMARTSM007171.9E-42677IPR001005SANT/Myb domain
PfamPF002495.4E-72974IPR001005SANT/Myb domain
SuperFamilySSF466892.37E-83082IPR009057Homeodomain-like
CDDcd001671.33E-63074No hitNo description
PROSITE profilePS5129419.53139195IPR017930Myb domain
SuperFamilySSF466896.43E-18140195IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-17142193IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.1E-12143189IPR009057Homeodomain-like
SMARTSM007172.9E-13143193IPR001005SANT/Myb domain
PfamPF002493.1E-12146190IPR001005SANT/Myb domain
CDDcd001671.59E-11146191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MMREAYMEVL PPMDHYTSRS NWFLGAPRVW TAKENKEFER ALAALDLRRP DWEKVAQAIP  60
GRTVDEVVSH FRSLEVDVRQ IESGVMPFPG YGGGRGGAAN SFTLQWDGSS GHVAGDFRHG  120
GYRFAGGCGK RHPGRTPEQE RKKGVPWTEE EHRLFLLGLK KYGKGDWRNI SRNFVHTRTP  180
TQVASHAQKY FIRLNSGGKD KRRSSIHDIT TVNLNDDQPP SPTQSSLITK QSNALAPTAA  240
VSQFSLKGDT KQHGSANLPF NSPSRTPGGM PAYGMGLQDQ GLQCAPLHDQ LVANASVLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-152591673RADIALIS
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817822.11e-175transcription factor DIVARICATA-like
TrEMBLA5HJS51e-178A5HJS5_9POAL; MYB_Al protein
STRINGSi002426m1e-170(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78863348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.19e-70MYB family protein