PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00011.1.g01810.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 350aa    MW: 38850.1 Da    PI: 6.4219
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00011.1.g01810.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix331.6e-1070161185
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegek...krts 73 
                                   +Wt+  + aL++a  ++  r++r++ ++  W ev++       r  g+  s  qC++++  l+k+++k+k++ +   +r+ 
  Zjn_sc00011.1.g01810.1.sm.mk  70 EWTEGSTFALLDAWGDRFVRSGRRAVRADEWLEVARLAaasdgRPAGY-FSESQCRNRIGTLRKKFRKEKDRLRvaaRRSR 149
                                   5***********************************998887555555.5889******************8762225678 PP

                      trihelix  74 essstcpyfdql 85 
                                   +s+s+++yfd+l
  Zjn_sc00011.1.g01810.1.sm.mk 150 PSTSNWVYFDKL 161
                                   9999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-1469163No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGEGDAPSPS PSRSLSSSCG AASPRSPSSP RADCYARGFE FAPRLAPYEL PSSPERVPSP  60
DAPPARASPE WTEGSTFALL DAWGDRFVRS GRRAVRADEW LEVARLAAAS DGRPAGYFSE  120
SQCRNRIGTL RKKFRKEKDR LRVAARRSRP STSNWVYFDK LVSILDPPLP PTATHHSDAQ  180
PSPSPPPPRP PLLLLHVVTR RRDTRPSPRL SWGRDAPERL LGGGGDTALM DSRMDAKFGE  240
EHKIEAAPDN QNGFAAFTES LQKFGDVLQR LESRKRQHMV EVEQMRKDFH RDLDAKWREI  300
LERAQAEIAS LEDEDSDEGD EEDGDGGDRI KKLEYLGDHG QSNGTMDTGP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969765.11e-105trihelix transcription factor ASIL1
TrEMBLA0A0A9QK031e-107A0A0A9QK03_ARUDO; Uncharacterized protein
STRINGSi002033m1e-104(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80902224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-17sequence-specific DNA binding transcription factors