PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00011.1.g00990.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 295aa    MW: 32347.9 Da    PI: 5.7785
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00011.1.g00990.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.8e-151969148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                                  +g W++eEde+l++ + ++G g+W+++++  g   + R++k+c++rw +yl
  Zjn_sc00011.1.g00990.1.am.mk 19 KGLWSPEEDEKLYNHIILYGVGCWSSVPKLAGmhwLQRCGKSCRLRWINYL 69
                                  678**********************************************97 PP

2Myb_DNA-binding482.9e-1575119147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg+++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ 
  Zjn_sc00011.1.g00990.1.am.mk  75 RGSFSQQEEDAIVGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 119
                                   899*******************.*********.***********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.7071469IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-211472IPR009057Homeodomain-like
SuperFamilySSF466891.17E-2817116IPR009057Homeodomain-like
SMARTSM007179.5E-121871IPR001005SANT/Myb domain
PfamPF002491.2E-131969IPR001005SANT/Myb domain
CDDcd001674.66E-112269No hitNo description
PROSITE profilePS5129424.51770124IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2573124IPR009057Homeodomain-like
SMARTSM007172.2E-1474122IPR001005SANT/Myb domain
PfamPF002491.3E-1375119IPR001005SANT/Myb domain
CDDcd001672.18E-1077117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGRQPGGTGG AGVQQKLRKG LWSPEEDEKL YNHIILYGVG CWSSVPKLAG MHWLQRCGKS  60
CRLRWINYLR PDLKRGSFSQ QEEDAIVGLH EILGNRWSQI ASHLPGRTDN EIKNFWNSCL  120
KKKLRQRGLD PSTHKPISGN AEDQKQQAAS TEGGTAPKQQ QQQEVFDPFP LTDSFDGGFD  180
AAGAALYGHL GSCKVDAAGG FVDYSSVLDV PENLGYGGES SSNSSNNNNW NCAPEVNTVI  240
DGVAAQHWGG GDDGEALLEH KFLLPCHGQQ EQSMPHFDFD ISRGAVVGEF NLEFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27171245108B-MYB
1h8a_C7e-271712425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3725341e-139AK372534.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3004I06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969673.11e-142myb-related protein Hv33
SwissprotP200273e-97MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A2T7DHX11e-152A0A2T7DHX1_9POAL; Uncharacterized protein
STRINGSi005548m1e-141(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.19e-70myb domain protein 86