PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00011.1.g00770.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 349aa MW: 38414.5 Da PI: 11.7874 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1e-16 | 128 | 175 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEdell + v++ G g+W+t +r+ g+ R++k+c++rw +yl Zjn_sc00011.1.g00770.1.am.mk 128 RGPWSPEEDELLSRFVAREGEGRWRTLPRRAGLLRCGKSCRLRWMNYL 175 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 42.5 | 1.5e-13 | 182 | 240 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT.............-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.............tWktIartmgkgRtlkqcksrwqkyl 48 g+ ++E++l+++++++lG++ +W++Ia +++ gRt++++k++w+++l Zjn_sc00011.1.g00770.1.am.mk 182 GPIAADEEDLILRLHRLLGNRfilarvcartrarRWSLIAGRLP-GRTDNEIKNYWNSHL 240 556689**************************************.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.424 | 123 | 179 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-23 | 126 | 236 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-13 | 127 | 177 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 128 | 175 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-21 | 129 | 182 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.59E-10 | 130 | 175 | No hit | No description |
PROSITE profile | PS51294 | 14.222 | 180 | 244 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-11 | 180 | 242 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-22 | 183 | 244 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-11 | 185 | 240 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.35E-9 | 186 | 240 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048354 | Biological Process | mucilage biosynthetic process involved in seed coat development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MEGGSPRPPK EEKQGIVRGL LLFPPIGKTR RPESKRRQSA PRNFLGFPKR NRPRAEGTNH 60 PTGRCPSGAV APRRTARRQK RRAIPRATER DRSRTSRQGG AMTRKQPAAV VRRRGGGGGA 120 AAVPALKRGP WSPEEDELLS RFVAREGEGR WRTLPRRAGL LRCGKSCRLR WMNYLRPDIK 180 RGPIAADEED LILRLHRLLG NRFILARVCA RTRARRWSLI AGRLPGRTDN EIKNYWNSHL 240 SKKLLAQGID PRTHRPLHAA HNSNSNADSK KPCVSPPPPS ASTSGAGVAG EDGGSDFAAA 300 MGLDADGFDG FGDEFRASWD APRAGFDLGF ATVDDGTFSS FLDSLISED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-22 | 122 | 244 | 1 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 8e-81 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002456198.2 | 6e-90 | transcription repressor MYB5 | ||||
Swissprot | Q38850 | 1e-69 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A0D9V4I4 | 2e-93 | A0A0D9V4I4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G23630.1 | 4e-94 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 3e-66 | myb domain protein 5 |
Publications ? help Back to Top | |||
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