PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00011.1.g00770.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 349aa    MW: 38414.5 Da    PI: 11.7874
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00011.1.g00770.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-16128175148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg+W++eEdell + v++ G g+W+t +r+ g+ R++k+c++rw +yl
  Zjn_sc00011.1.g00770.1.am.mk 128 RGPWSPEEDELLSRFVAREGEGRWRTLPRRAGLLRCGKSCRLRWMNYL 175
                                   89******************************99************97 PP

2Myb_DNA-binding42.51.5e-13182240248
                                   SSS-HHHHHHHHHHHHHTTTT.............-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.............tWktIartmgkgRtlkqcksrwqkyl 48 
                                   g+  ++E++l+++++++lG++             +W++Ia +++ gRt++++k++w+++l
  Zjn_sc00011.1.g00770.1.am.mk 182 GPIAADEEDLILRLHRLLGNRfilarvcartrarRWSLIAGRLP-GRTDNEIKNYWNSHL 240
                                   556689**************************************.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.424123179IPR017930Myb domain
SuperFamilySSF466891.17E-23126236IPR009057Homeodomain-like
SMARTSM007179.8E-13127177IPR001005SANT/Myb domain
PfamPF002491.3E-14128175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-21129182IPR009057Homeodomain-like
CDDcd001671.59E-10130175No hitNo description
PROSITE profilePS5129414.222180244IPR017930Myb domain
SMARTSM007177.6E-11180242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-22183244IPR009057Homeodomain-like
PfamPF002491.1E-11185240IPR001005SANT/Myb domain
CDDcd001675.35E-9186240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEGGSPRPPK EEKQGIVRGL LLFPPIGKTR RPESKRRQSA PRNFLGFPKR NRPRAEGTNH  60
PTGRCPSGAV APRRTARRQK RRAIPRATER DRSRTSRQGG AMTRKQPAAV VRRRGGGGGA  120
AAVPALKRGP WSPEEDELLS RFVAREGEGR WRTLPRRAGL LRCGKSCRLR WMNYLRPDIK  180
RGPIAADEED LILRLHRLLG NRFILARVCA RTRARRWSLI AGRLPGRTDN EIKNYWNSHL  240
SKKLLAQGID PRTHRPLHAA HNSNSNADSK KPCVSPPPPS ASTSGAGVAG EDGGSDFAAA  300
MGLDADGFDG FGDEFRASWD APRAGFDLGF ATVDDGTFSS FLDSLISED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-221222441108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703068e-81HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456198.26e-90transcription repressor MYB5
SwissprotQ388501e-69MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A0D9V4I42e-93A0A0D9V4I4_9ORYZ; Uncharacterized protein
STRINGLPERR01G23630.14e-94(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-66myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]