PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00011.1.g00630.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 322aa MW: 34436.9 Da PI: 10.1982 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 99.7 | 1.7e-31 | 144 | 237 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 f+k+ tpsdv+k++rlv+pk++ae+h g + +++ l +ed g++W+++++y+++s++yvltkGW++Fvk++gL Zjn_sc00011.1.g00630.1.sm.mk 144 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGL 224 89*******************************5556799***************************************** PP -TT-EEEEEE-SS CS B3 75 kegDfvvFkldgr 87 ++gD+v F+++ + Zjn_sc00011.1.g00630.1.sm.mk 225 NAGDVVGFYRSAE 237 *********7654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.4E-5 | 20 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-12 | 31 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-9 | 32 | 66 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 12.075 | 32 | 66 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-41 | 137 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.57E-29 | 142 | 235 | No hit | No description |
SuperFamily | SSF101936 | 3.14E-31 | 142 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.93 | 144 | 253 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-28 | 144 | 239 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-23 | 144 | 252 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MDSASSLVED TSGGGGGGAS TDKLRALAAV AARVWLGTFA GEADAARAYD VAAQRFRGRD 60 AVTNFRPLAD ADPNAAAELR FLASRSKAEV VDMLRKHTYF DELAQNRRAF AASAPTTTSS 120 PLAGDHAAGS SLRPSPVAAR EHLFDKTVTP SDVGKLNRLV IPKQHAEKHF PLQLPSAGGE 180 SKGVLLNFED AGGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLNAGDVV GFYRSAESDA 240 ADSKLFIDCK RRPNNTTAAS MATPVTVSSP TRVTKAVRLF GVDLLTAPTP ESAMTGCKRA 300 RDFAATPPQA VFKKPLVELA LV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-53 | 137 | 253 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-53 | 137 | 253 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020398137.1 | 1e-148 | AP2/ERF and B3 domain-containing protein Os01g0693400 isoform X2 | ||||
Swissprot | Q8RZX9 | 1e-144 | Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400 | ||||
TrEMBL | A0A3B6FP05 | 1e-143 | A0A3B6FP05_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446PWX7 | 1e-143 | A0A446PWX7_TRITD; Uncharacterized protein | ||||
STRING | Pavir.Eb02845.1.p | 1e-151 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 4e-75 | related to ABI3/VP1 2 |