PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00011.1.g00300.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 318aa    MW: 33891.1 Da    PI: 8.4695
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00011.1.g00300.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-151462148
                                    TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                    rg+W +eEdell  +v+  G+g +W + +++ g++R++k+c++rw++yl
  Zjn_sc00011.1.g00300.1.sm.mkhc 14 RGPWAPEEDELLRSYVQSNGTGgNWIALPHKAGLNRCGKSCRLRWLNYL 62
                                    89*********************************************97 PP
2Myb_DNA-binding36.31.3e-1171111446
                                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                      T++Ed ++  +    G++ W+ Ia++++ gRt++++k++w++
  Zjn_sc00011.1.g00300.1.sm.mkhc  71 YTEQEDRIICSLYSSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111
                                     69*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.225966IPR017930Myb domain
SuperFamilySSF466893.22E-2611109IPR009057Homeodomain-like
SMARTSM007172.7E-101364IPR001005SANT/Myb domain
PfamPF002493.7E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-221569IPR009057Homeodomain-like
CDDcd001672.28E-71662No hitNo description
SMARTSM007172.4E-1167115IPR001005SANT/Myb domain
PROSITE profilePS5129414.98767117IPR017930Myb domain
PfamPF002492.5E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2270116IPR009057Homeodomain-like
CDDcd001672.35E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGPWAPE EDELLRSYVQ SNGTGGNWIA LPHKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG YTEQEDRIIC SLYSSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKALSI  120
QQHQQQEYYG NHHHQAGAGG ARGRERRLLV ATTPPPAQQQ SQCASTQPLP ASAPTTTAGG  180
GDACSFGAMY SSPSVPQAPP LAPLYAVPAP KQQQHAAPSL AEYAQALPQS TVGVGVATSW  240
ATSTGGMMAL EDMFLPELLS AGEFPSGDLF GGGFGPALVQ DRAPSSLQEL SACYVPNAQA  300
EKWAADAKSG TGLCHSLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794311e-151HF679431.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB25 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311318.11e-124uncharacterized protein LOC8068029
TrEMBLA0A0A9DFU31e-144A0A0A9DFU3_ARUDO; Uncharacterized protein
STRINGSi002350m1e-121(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.15e-72myb domain protein 84