PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00010.1.g03070.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Nin-like
Protein Properties Length: 573aa    MW: 62166.1 Da    PI: 6.6459
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00010.1.g03070.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK66.93.1e-21484534252
                        RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                   +++++  d+s+yF+lp+++A+keL+vc+TvLK i R++GI RWP+Rki+++
  Zjn_sc00010.1.g03070.1.am.mk 484 TSKLERRDISRYFHLPMAEACKELQVCATVLKCIRRKFGITRWPYRKINKI 534
                                   678999******************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.280.106.9E-433158IPR008914Phosphatidylethanolamine-binding protein
SuperFamilySSF497778.37E-385158IPR008914Phosphatidylethanolamine-binding protein
CDDcd008662.02E-3425151No hitNo description
PfamPF011612.4E-749148IPR008914Phosphatidylethanolamine-binding protein
PROSITE patternPS0122006789IPR001858Phosphatidylethanolamine-binding, conserved site
PROSITE profilePS5151915.88469554IPR003035RWP-RK domain
PfamPF020421.0E-19487534IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MSVSRDPLVV GRIVGDVVDP FAASALLRVV YGGREMTCGS ELRPSQVVNE PMVQVTGGGG  60
GCGGALYTLV MVDPDAPSPS NPSNREYLHW YVVAYEGPRP SAGIHRFAFI VFRQAVWQVI  120
YAPGWRANFN TRDFTACYSL GAPVAAVYFN CQREGGCGGR RPPPATPAIS RPLHPSRPCA  180
SPHTLAAQRA AMAANGDRAE GQWPFDPLLV PDVDVMHLLD VPGGLYSPPA ATPTQNVTSN  240
GCYSGNPFDW TAMASHGAYS SAESDAPPAV GATMAGGASS TSDRQDVRAP SSYVHKGALD  300
CTGCQLLREI LHCNGFETTK LCIHGAAGLF FHATLEVYRH ASHEGSAMAP THRSFTDFMA  360
RDYAWVKHYL LDYAQQRAAG GYTVVYDSTS DFLDVLCTSM VGIGGQADDR HEIEASAEAK  420
IIVDDDDQLL ANAGAAVHPM VVEEEDEPAA SGPSQPRNNA VDKQKQQVVQ PGMRSRLAIQ  480
RERTSKLERR DISRYFHLPM AEACKELQVC ATVLKCIRRK FGITRWPYRK INKIDNQIAK  540
LRENGNGSAA AMEEIQKLID ARREIIDSPP TET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wkp_A5e-5711544170FLOWERING LOCUS T protein
1wkp_B5e-5711544170FLOWERING LOCUS T protein
1wkp_C5e-5711544170FLOWERING LOCUS T protein
1wkp_D5e-5711544170FLOWERING LOCUS T protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2419117e-67EU241911.1 Zea mays ZCN20 (ZCN20) gene, complete cds.
GenBankEU2419357e-67EU241935.1 Zea mays ZCN20 (ZCN20) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368QD385e-92A0A368QD38_SETIT; Uncharacterized protein
STRINGSi025242m2e-81(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80552944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.16e-11RWP-RK domain-containing protein