PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00010.1.g02480.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 519aa    MW: 57083.8 Da    PI: 9.8121
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00010.1.g02480.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.83.9e-31184238358
                   ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                                   +vrY+eClkNhAa++Gg+a+DGCgEfmp+ ge+g+ aal+C+ACgCHRnFHR+e++
  Zjn_sc00010.1.g02480.1.am.mk 184 EVRYRECLKNHAAAIGGTATDGCGEFMPA-GEDGSLAALRCSACGCHRNFHRKESS 238
                                   69**************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.4E-28185237IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-21186237IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.5E-29186236IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.278187236IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE patternPS000280223246IPR007087Zinc finger, C2H2
Gene3DG3DSA:1.10.10.601.0E-27299372IPR009057Homeodomain-like
SuperFamilySSF466891.16E-16301371IPR009057Homeodomain-like
TIGRFAMsTIGR015653.1E-25311367IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MDALSSSLDT TPRFVLFHSL QFLLPFFFFL LSIFLFLLNG ILLASLPLPF VPPLLEQWKE  60
ELIPFVRAGC WTGVAVLSGW SSKEVSKAGP CKSSRGGKGA KQASKASRMD FSGMQSELPM  120
AMHAGGSRYL GLHHHHAHEQ PQQQQHNHGA NGREMSPREV EEEAKNRQAL AVVPVSTGAG  180
GGGEVRYREC LKNHAAAIGG TATDGCGEFM PAGEDGSLAA LRCSACGCHR NFHRKESSDG  240
HGRPLHRHQQ LTGDPLSPLH HRGLLVAAAP TRMVMPLSAA HPHPHHHATT SSESDDARQR  300
CDPHQPPAAT RKRFRTKFTV EQKARMLGFA EAAGWRLQRL EDAAVQRFCQ EVGVKRRVLK  360
VWMHNNKHTL ARRCHGDQDQ QQLHLPPAGD DGGSLPHLES GQSPAPQQQV QLRLEEAGEH  420
VARPPQNGGS RDGFSEAGTV SWPHQEKIKI CVSELKFSSQ KHRTGDRQPA SFAGTEHGTP  480
LLLLRLLRLQ RLRPRVGSWH WQAEQMQAGM AGGCRGGRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A7e-223103691675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0432582e-82BT043258.1 Zea mays full-length cDNA clone ZM_BFc0135C02 mRNA, complete cds.
GenBankBT0650052e-82BT065005.1 Zea mays full-length cDNA clone ZM_BFc0120L10 mRNA, complete cds.
GenBankBT0655692e-82BT065569.1 Zea mays full-length cDNA clone ZM_BFb0298N18 mRNA, complete cds.
GenBankEU9655082e-82EU965508.1 Zea mays clone 286516 mRNA sequence.
GenBankJX4285002e-82JX428500.1 Zea mays subsp. mays clone pUT3098 ZHD21 ZF-HD type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443023.11e-109zinc-finger homeodomain protein 3
RefseqXP_021321592.11e-109zinc-finger homeodomain protein 3
SwissprotQ2QW444e-69ZHD3_ORYSJ; Zinc-finger homeodomain protein 3
TrEMBLC5YTM11e-108C5YTM1_SORBI; Uncharacterized protein
STRINGSb08g006490.11e-108(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.23e-61homeobox protein 31