PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00010.1.g00500.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 341aa MW: 36555.8 Da PI: 8.4858 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.7 | 3.7e-12 | 140 | 186 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++i+++f eL ++P + +K++ a+iL +A+ Y+k+Lq Zjn_sc00010.1.g00500.1.sm.mk 140 EHIMAERKRREKIRQRFVELSAVIPGL-----TKMDNATILYRATSYVKELQ 186 599***********************9.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.665 | 136 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-15 | 139 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.8E-10 | 140 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-16 | 140 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.45E-13 | 141 | 190 | No hit | No description |
SMART | SM00353 | 6.0E-13 | 142 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MEDMTEFLQW ATNALQQEHS APPVADCASP SVLLGVPEEQ RSIMGAPATN RWIPGGTTDG 60 SLVGHIAVPA APMVAPSTNM AGNAPTSSLV GGNTSASWSF GSATGRILSE LAYRSQPTRT 120 ACLTNPWSSA SFAPPPYARE HIMAERKRRE KIRQRFVELS AVIPGLTKMD NATILYRATS 180 YVKELQESIK RREAAGSALS GSMDTIVPTP RHATTAGPTK PLPDVQAHFS GKSVMVRILC 240 ENGKGVIVKV LKEVEEAHLS IVDANFMAFS ACTLIITITA KLLEGFIITA DEIISRLNFR 300 PSETAPADGP GAPTGNGYCR LATARGHRPL SWFEGKNRMV D |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 149 | ERKRRE |
2 | 145 | 150 | RKRREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175444.1 | 2e-69 | transcription factor bHLH25-like | ||||
TrEMBL | A0A0A9D0A7 | 1e-69 | A0A0A9D0A7_ARUDO; Uncharacterized protein | ||||
TrEMBL | A0A3B6JEJ4 | 9e-70 | A0A3B6JEJ4_WHEAT; Uncharacterized protein | ||||
STRING | GRMZM2G120021_P01 | 5e-63 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP33283 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22750.2 | 2e-30 | bHLH family protein |