PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00009.1.g11570.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 699aa MW: 75725.5 Da PI: 10.7344

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00009.1.g11570.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.9	1.8e-34	103	190	1	82
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec.....ea 75 aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai el++ + +a se+ e+ Zjn_sc00009.1.g11570.1.am.mk 103 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKAAIEELPDRPEAAAaSEAaaeatEQ 183 689**************************************************************4444422222211122 PP TCP 76 esssssa 82 ++++ s+ Zjn_sc00009.1.g11570.1.am.mk 184 GEQVTST 190 2222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-31	105	208	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.615	106	164	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence Send to blast
MASRFKLEED KNQLSEGLDP WSNNPTATTN TLHYLLQEKE RAQAQEQLQI YHHQGFSYLE 60 HHRRQQQNQS TGGAGCDGLS SGESTPVDAL TTAFGSGRIV RSAAGRKDRH SKVCTARGLR 120 DRRVRLAAHT AIRFYDVQDR LGYDRPSKAV DWLIRNAKAA IEELPDRPEA AAASEAAAEA 180 TEQGEQVTST SYGFSNPGGA ITAVAGGSFV QHSVGADERN QRIPSWHASE NSTGDGRGGG 240 NGDSYMFGMQ PQSQVLPQGE PLQSSGGWAS ARTWLDPLTA IQQPSTMTGQ IGFSHLIGGA 300 GFMGFLAPAT THQRLHVPSL PRASGVAAPV SAMATASPAI VRAHWPNGIT GDRTRAHAEP 360 RGVGVSPDFH HEHTRRDPAD YGITFRFRLI SFIAPGRCSK ESCQKSPVLI DSGVRPVRGR 420 GDEIVRDGSL LELDSADWIG KQQVDFPPRF AWIQRGSACV ASSCTATRPA RFLATPKWAQ 480 YKVSRYSQEM RSGAARPPHW RDSPLSVEKA ARHEEARQVT GIRALHSSGL ALQLHRSASS 540 MANNRQLARR GAVSRSPTRQ TAAECHGSPP SEQGFAETRG FVPVPVCATA RTAGPGRQLR 600 RQSGTRNHRV SVKRFSSARA LPGPVSGGDP LHRIDASPSR RGVTSRLAQM ATSKFHIRAP 660 LFPFGLCPHM TWTNTRNGAL STDARSHYAP ARPTTVGHV

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence Send to blast

MASRFKLEED KNQLSEGLDP WSNNPTATTN TLHYLLQEKE RAQAQEQLQI YHHQGFSYLE  60
HHRRQQQNQS TGGAGCDGLS SGESTPVDAL TTAFGSGRIV RSAAGRKDRH SKVCTARGLR  120
DRRVRLAAHT AIRFYDVQDR LGYDRPSKAV DWLIRNAKAA IEELPDRPEA AAASEAAAEA  180
TEQGEQVTST SYGFSNPGGA ITAVAGGSFV QHSVGADERN QRIPSWHASE NSTGDGRGGG  240
NGDSYMFGMQ PQSQVLPQGE PLQSSGGWAS ARTWLDPLTA IQQPSTMTGQ IGFSHLIGGA  300
GFMGFLAPAT THQRLHVPSL PRASGVAAPV SAMATASPAI VRAHWPNGIT GDRTRAHAEP  360
RGVGVSPDFH HEHTRRDPAD YGITFRFRLI SFIAPGRCSK ESCQKSPVLI DSGVRPVRGR  420
GDEIVRDGSL LELDSADWIG KQQVDFPPRF AWIQRGSACV ASSCTATRPA RFLATPKWAQ  480
YKVSRYSQEM RSGAARPPHW RDSPLSVEKA ARHEEARQVT GIRALHSSGL ALQLHRSASS  540
MANNRQLARR GAVSRSPTRQ TAAECHGSPP SEQGFAETRG FVPVPVCATA RTAGPGRQLR  600
RQSGTRNHRV SVKRFSSARA LPGPVSGGDP LHRIDASPSR RGVTSRLAQM ATSKFHIRAP  660
LFPFGLCPHM TWTNTRNGAL STDARSHYAP ARPTTVGHV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	6e-19	111	165	1	55	Putative transcription factor PCF6
5zkt_B	6e-19	111	165	1	55	Putative transcription factor PCF6

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU972119	1e-157	EU972119.1 Zea mays clone 375445 mRNA sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12056	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	4e-30	TCP family protein