PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00009.1.g11370.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 533aa MW: 57163.9 Da PI: 9.8975

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00009.1.g11370.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117	7.4e-37	392	446	5	59
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 l+cprC s+ntkfCy+nny+++qPr+fCk C+ryWt+GGalrnvPvG+grrkn+ Zjn_sc00009.1.g11370.1.am.mk 392 PLPCPRCRSRNTKFCYFNNYNVNQPRHFCKDCHRYWTAGGALRNVPVGAGRRKNR 446 679**************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.8E-30	393	446	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.733	393	447	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	395	431	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-19	402	446	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MGTATPALLL YSNEAISLSR RRKVNSTPVG SDFRSKLSTP SPCTPEEIAS PALSIPTAYS 60 EPEYGTGDGT RVVALRPGAA DQPEPWLVLS CRCEHHLLVA LAGHGRGSVK PPGRIPLGAT 120 RKYEAATGVA DHATLGRRAP IPSLFRNSKE TTQPCYQVHS LPNLLAAGMD TASQQCLYKN 180 GEILLESQTP HAPPPSSSST SARQPSPAIT ITLNKLVLLG RRREGTGRVS CPTPSAGDAP 240 FCRFLAFFPR PNPSFLSAPA HLAGVPLLLA SWLLLVRHRP PRFVVWMLSH VEMARGAGGI 300 KLFGKVITQC AAPAPSQEDP ASRAAFVRER PADPDESEQP TVKREAACAD HNFEKHQQHG 360 GAESKAAGGH PRSRQQDTAE ARAAAAASSA PPLPCPRCRS RNTKFCYFNN YNVNQPRHFC 420 KDCHRYWTAG GALRNVPVGA GRRKNRPLGP VVAAHHANHH QLQLHHHHHP AAAAAGLVLG 480 FPGDPSSPAS PVYADRWPVC PDRRCELRGK SVQRLSCVCA RAWAAVSGTG LGD

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MGTATPALLL YSNEAISLSR RRKVNSTPVG SDFRSKLSTP SPCTPEEIAS PALSIPTAYS  60
EPEYGTGDGT RVVALRPGAA DQPEPWLVLS CRCEHHLLVA LAGHGRGSVK PPGRIPLGAT  120
RKYEAATGVA DHATLGRRAP IPSLFRNSKE TTQPCYQVHS LPNLLAAGMD TASQQCLYKN  180
GEILLESQTP HAPPPSSSST SARQPSPAIT ITLNKLVLLG RRREGTGRVS CPTPSAGDAP  240
FCRFLAFFPR PNPSFLSAPA HLAGVPLLLA SWLLLVRHRP PRFVVWMLSH VEMARGAGGI  300
KLFGKVITQC AAPAPSQEDP ASRAAFVRER PADPDESEQP TVKREAACAD HNFEKHQQHG  360
GAESKAAGGH PRSRQQDTAE ARAAAAASSA PPLPCPRCRS RNTKFCYFNN YNVNQPRHFC  420
KDCHRYWTAG GALRNVPVGA GRRKNRPLGP VVAAHHANHH QLQLHHHHHP AAAAAGLVLG  480
FPGDPSSPAS PVYADRWPVC PDRRCELRGK SVQRLSCVCA RAWAAVSGTG LGD

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582409	6e-92	KC582409.1 Sorghum bicolor dof12 protein (dof12) gene, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6495	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34140.1	4e-27	Dof family protein