PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00009.1.g09690.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 480aa    MW: 50593.5 Da    PI: 9.5913
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00009.1.g09690.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-05240262223
                                   EETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                   +C+ Cg+ Fs +++L+ H  + H
  Zjn_sc00009.1.g09690.1.sm.mk 240 SCHRCGEQFSKWETLEAHHLSkH 262
                                   7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.746239267IPR007087Zinc finger, C2H2
PROSITE patternPS000280241262IPR007087Zinc finger, C2H2
SuperFamilySSF563991.92E-22264479No hitNo description
Gene3DG3DSA:3.90.228.104.7E-12288451IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MGERRRRASA AAAGGGGVRA EEEKAAAPGK AAPPTVWFAL KKSLHCRSAP SDVHVPRPKA  60
APSAGGEHLS SIVTKRAAWS GCSRSIANLR DVIHGSKRHP GQPPSCSPRS IGSSEFLNPI  120
AHEVVLSTNS RCELKITGFG GLGAAGAAHD SDGDAGCVVS SFVGTLRPGT PGPAWAAGHA  180
GLQYSGSCRG NSVRCTPPRS PNVLLERNGS VVLSSRRASC EETTTKSGGV NNKGSGGGMS  240
CHRCGEQFSK WETLEAHHLS KHAVTELMEG DSSRKIVEII CRTSLLKSES SCVRIERVFK  300
VHNTQRTLSR FEEYREAVKL KASKLPKKHP RCLADGNELL RFHGATISCG LGGGGSSPSL  360
CASDKCAVCR IIRHGFSSKK EASCKAGGVG VFTTSTSGRA FESIDVPADD DPADATRKAL  420
LVCRVVAGRV HKPLDNLKEF VGQTGFDSLA GKVGPYSNIE ELYLLNPRAL LPCFVVICKP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0710140.0AK071014.1 Oryza sativa Japonica Group cDNA clone:J023079O17, full insert sequence.
GenBankAK1043110.0AK104311.1 Oryza sativa Japonica Group cDNA clone:001-017-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635096.10.0uncharacterized protein LOC4327046
TrEMBLQ8LQM00.0Q8LQM0_ORYSJ; Os01g0785900 protein
STRINGOS01T0785900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-134C2H2 family protein