PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00009.1.g08000.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 956aa MW: 103629 Da PI: 9.8431

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00009.1.g08000.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.5	6.3e-40	106	205	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vh++FGasnv+k+l ++p+ er da+sslvyeA+ r+rdPvyG++g i+ Zjn_sc00009.1.g08000.1.am.mk 106 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHRVFGASNVSKMLLEVPKPERADAASSLVYEANLRLRDPVYGCMGAIS 186 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 lqqq++ l+ael+++++e Zjn_sc00009.1.g08000.1.am.mk 187 VLQQQVNALEAELDAVRAE 205 ************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.038	105	206	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.1E-40	106	203	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 956 aa Download sequence Send to blast
MQDSAVRAAN VRAFEGAETG LPSTPPPCHS SSCPSPSPKH MRACLNVHGE VCDDHRPFWE 60 RLDEIGKKIK RETDATGIAA SASTAPDENP VPRRLGLGDA LNTVTPCAAC KLLRRRCAQE 120 CPFAPYFSPH EPHKFAAVHR VFGASNVSKM LLEVPKPERA DAASSLVYEA NLRLRDPVYG 180 CMGAISVLQQ QVNALEAELD AVRAEIFKHR YRQAGAGGGA GFTGDAAQAT ASFVVPAPAV 240 HAGDVVSVAE ACQEVATPAG APGMSPSSAV YVAEAVEQPS NTTDHYSCLN TRQGGGGGAF 300 GGVACGVCMQ LSSSYWLSSK QAKSDIREEW DGEAARLGWV LLRVRGVAIG MPRDLVRNAW 360 CSLQTTGIYR WLGCGRAPWP LTAAVLLYIC TNEQLAMAAA RSCPMDSGLT GMDHRCPEFP 420 ASRMRCASML STFLTFTCFD WPTKGADFAN LEMMHVVVAA ARDLARCQCS ACPARVPVQQ 480 AIEAEPVYCL CTEQKAIEGQ KADTSGSVGV RRGLISHAFR NRRRNVTTNP LRLPARRGAV 540 HDDRRRVLAL VRGDPPRRPQ AQGGTTTSDF AKDGTAVARY GWIRPRPTAG RSTRTKRPCP 600 LGQPTPRQLA LKNHLLLLSV PPAGRRPHAA AVAFPAPLAH YRLSRARGRP GHSATNSRWY 660 RSSSFSHYLF MVAYDIFTSP ARSNKKSIAW TLRNNKLPSA AQPARAVLSG SWRFQSRPGF 720 AASDGTDRAH LKLRGYWTDE RHELRHIRIA VHRGPAARVS RRWIGKTPSP LRLPGFAPMR 780 SEAAERADPQ PTRAAYCSAR ASPVHGGFLD AQTLSSEQQQ ETIEQSFRPQ TQRVGRPANS 840 PQNEWQICVS AMDSEARALS LRPRHDRHPF PSTFAPAGVA CPAFCGRLPM PCRVVARGMC 900 AHRTMDGELS IAHSPSQQPP PLRPPPTHRH PPSTALNSAA PLGQPAITDT GADEQP

Sequence ? help Back to Top

Protein Sequence Length: 956 aa Download sequence Send to blast

MQDSAVRAAN VRAFEGAETG LPSTPPPCHS SSCPSPSPKH MRACLNVHGE VCDDHRPFWE  60
RLDEIGKKIK RETDATGIAA SASTAPDENP VPRRLGLGDA LNTVTPCAAC KLLRRRCAQE  120
CPFAPYFSPH EPHKFAAVHR VFGASNVSKM LLEVPKPERA DAASSLVYEA NLRLRDPVYG  180
CMGAISVLQQ QVNALEAELD AVRAEIFKHR YRQAGAGGGA GFTGDAAQAT ASFVVPAPAV  240
HAGDVVSVAE ACQEVATPAG APGMSPSSAV YVAEAVEQPS NTTDHYSCLN TRQGGGGGAF  300
GGVACGVCMQ LSSSYWLSSK QAKSDIREEW DGEAARLGWV LLRVRGVAIG MPRDLVRNAW  360
CSLQTTGIYR WLGCGRAPWP LTAAVLLYIC TNEQLAMAAA RSCPMDSGLT GMDHRCPEFP  420
ASRMRCASML STFLTFTCFD WPTKGADFAN LEMMHVVVAA ARDLARCQCS ACPARVPVQQ  480
AIEAEPVYCL CTEQKAIEGQ KADTSGSVGV RRGLISHAFR NRRRNVTTNP LRLPARRGAV  540
HDDRRRVLAL VRGDPPRRPQ AQGGTTTSDF AKDGTAVARY GWIRPRPTAG RSTRTKRPCP  600
LGQPTPRQLA LKNHLLLLSV PPAGRRPHAA AVAFPAPLAH YRLSRARGRP GHSATNSRWY  660
RSSSFSHYLF MVAYDIFTSP ARSNKKSIAW TLRNNKLPSA AQPARAVLSG SWRFQSRPGF  720
AASDGTDRAH LKLRGYWTDE RHELRHIRIA VHRGPAARVS RRWIGKTPSP LRLPGFAPMR  780
SEAAERADPQ PTRAAYCSAR ASPVHGGFLD AQTLSSEQQQ ETIEQSFRPQ TQRVGRPANS  840
PQNEWQICVS AMDSEARALS LRPRHDRHPF PSTFAPAGVA CPAFCGRLPM PCRVVARGMC  900
AHRTMDGELS IAHSPSQQPP PLRPPPTHRH PPSTALNSAA PLGQPAITDT GADEQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-38	106	215	11	120	LOB family transfactor Ramosa2.1
5ly0_B	1e-38	106	215	11	120	LOB family transfactor Ramosa2.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121919	1e-124	AK121919.1 Oryza sativa Japonica Group cDNA clone:J033106D14, full insert sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	3e-60	LOB domain-containing protein 15