PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00009.1.g07510.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 158aa MW: 17144.1 Da PI: 5.334

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00009.1.g07510.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	161.1	1.6e-50	17	120	1	94
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse..........asdkcqrekrktingddllw 69 vreqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvts+ asdkcq+ekrktingddllw Zjn_sc00009.1.g07510.1.sm.mkhc 17 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSDvsdfgcdafrASDKCQKEKRKTINGDDLLW 95 69*******************************************964444445555899************* PP NF-YB 70 alatlGfedyveplkvylkkyrele 94 a+atlGfe+yv+plk yl+kyre + Zjn_sc00009.1.g07510.1.sm.mkhc 96 AMATLGFEEYVDPLKNYLQKYREGD 120 ********************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.5E-49	15	127	IPR009072	Histone-fold
SuperFamily	SSF47113	8.38E-34	20	122	IPR009072	Histone-fold
Pfam	PF00808	1.2E-22	23	97	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.0E-19	51	69	No hit	No description
PRINTS	PR00615	2.0E-19	80	98	No hit	No description
PRINTS	PR00615	2.0E-19	99	117	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MADDSGNNEG SGGGGGVREQ DRFLPIANIS RIMKKAVPAN GKIAKDAKET LQECVSEFIS 60 FVTSDVSDFG CDAFRASDKC QKEKRKTING DDLLWAMATL GFEEYVDPLK NYLQKYREGD 120 SKLSTKGGDG SVKKDAINPH GGTSSSTNQS NGFEFLRM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	3e-44	18	118	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	3e-44	18	118	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269\|PubMed:14617083}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP094462	1e-68	FP094462.1 Phyllostachys edulis cDNA clone: bphyst012k19, full insert sequence.
GenBank	HG670306	1e-68	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001278514.1	4e-77	uncharacterized protein LOC100285917
Swissprot	Q5QMG3	5e-69	NFYB2_ORYSJ; Nuclear transcription factor Y subunit B-2
TrEMBL	A0A3L6SIL7	4e-77	A0A3L6SIL7_PANMI; Uncharacterized protein
STRING	Pavir.J35907.1.p	2e-76	(Panicum virgatum)
STRING	GRMZM2G303465_P04	2e-76	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53340.1	1e-60	nuclear factor Y, subunit B10