PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00009.1.g07210.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 211aa    MW: 22862.4 Da    PI: 8.919
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00009.1.g07210.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00099122144123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++Cp Cg  F     L  H+r+H
  Zjn_sc00009.1.g07210.1.sm.mk 122 HECPVCGLEFAVGQALGGHMRRH 144
                                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.26E-85781No hitNo description
PfamPF139121.6E-125883IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7235986IPR007087Zinc finger, C2H2
SMARTSM003550.385981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SuperFamilySSF576674.26E-8117144No hitNo description
PfamPF139122.3E-10121146IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93122149IPR007087Zinc finger, C2H2
SMARTSM003550.13122144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MSKRDRPAVA WETEALGAAE TARVLVLLAQ AQQRELMQLR HQGHGEPFQA GQLASSRVFE  60
CKTCSRQFPT FQALGGHRAS HKRPRLQLHH QPAVGDLCLG REPLPPPPRP PSSQQPVKPR  120
VHECPVCGLE FAVGQALGGH MRRHRAEADG GEAPTTKLLP AFEKVCDVTG GICLDLNLTP  180
SENCAKCRNV LVRGAAGKGV HKTLAMLDCS L
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032312e-34AP003231.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031D11.
GenBankAP0149572e-34AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818717.14e-76zinc finger protein ZAT12-like
TrEMBLA0A3L6SKA71e-76A0A3L6SKA7_PANMI; Zinc finger protein ZAT12
STRINGPavir.J34723.1.p1e-73(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-27C2H2 family protein