PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00009.1.g07040.1.es.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 216aa MW: 25596.3 Da PI: 7.553

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00009.1.g07040.1.es.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	201	7.3e-62	2	209	165	374
GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243 L+++A++++vpfef++ +a+r e++++e+L+++++E l+Vn+ ++ ++l+desv es+r+ vL+++++++P+++++ Zjn_sc00009.1.g07040.1.es.mkhc 2 LKDYAQTFNVPFEFQA-IASRYEAVQIEDLHIEKDELLIVNCLFRFETLMDESVVAESPRNMVLNTIRKMNPHLFIHGI 79 899***********.7********************************************************* PP GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 + ++n++ F+ rf eal+ ysa+fd+l++++pr++e+r +E +l+gre+ nv++ceg er+er e +++W+ r ++a Zjn_sc00009.1.g07040.1.es.mkhc 80 VNGSYNAPFFMSRFREALYQYSAIFDMLDTNIPRDNEQRLLIESALFGREAINVISCEGLERQERPEIYKQWQVRNQRA 158 *************************************************************************** PP GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 GFk++p+++ ++k + +r +++d + ++e++ +l+lgWk+r ++++S W+ Zjn_sc00009.1.g07040.1.es.mkhc 159 GFKQLPVNQGIMKRSREKVRCYHKD-FVIDEDNRWLLLGWKGRIILALSTWK 209 *******************77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	33.458	1	190	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-59	2	209	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
YLKDYAQTFN VPFEFQAIAS RYEAVQIEDL HIEKDELLIV NCLFRFETLM DESVVAESPR 60 NMVLNTIRKM NPHLFIHGIV NGSYNAPFFM SRFREALYQY SAIFDMLDTN IPRDNEQRLL 120 IESALFGREA INVISCEGLE RQERPEIYKQ WQVRNQRAGF KQLPVNQGIM KRSREKVRCY 180 HKDFVIDEDN RWLLLGWKGR IILALSTWKP DHRSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	8e-18	2	210	178	379	Protein SCARECROW
5b3h_D	8e-18	2	210	178	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456620.1	1e-142	scarecrow-like protein 9
Swissprot	O80933	2e-91	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A0A9DR93	1e-147	A0A0A9DR93_ARUDO; Uncharacterized protein
TrEMBL	A0A3L6SH50	1e-141	A0A3L6SH50_PANMI; Scarecrow-like protein 9
STRING	Sb03g039510.1	1e-141	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22289	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-93	GRAS family protein