PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00009.1.g07010.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 648aa    MW: 69366.2 Da    PI: 9.5215
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00009.1.g07010.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.3e-31464520258
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                                   +Dg++WrKYGqK++k++++prsYY+Cts++C +kk+ve+s +dp+++++tYeg H h
  Zjn_sc00009.1.g07010.1.am.mk 464 SDGFKWRKYGQKSIKNNPYPRSYYKCTSSRCGAKKHVEKSVDDPEMLIVTYEGPHLH 520
                                   7******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-29457521IPR003657WRKY domain
PROSITE profilePS5081127.462458523IPR003657WRKY domain
SuperFamilySSF1182909.81E-26461522IPR003657WRKY domain
SMARTSM007741.7E-35463522IPR003657WRKY domain
PfamPF031064.5E-25465520IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MVLLEAAAVA GRRRVCLSSG RSRRRATNGA PVRRRWKWNE SRFRLASPMP TPRALRLTPR  60
RSRRIDARTM MTTPGSSCAV ENEDDGSEIR PSGGDIGNMP VHSFTSMHPF LTVEPVRQTV  120
GLVLSVATAS RISDRSTIDV ASLPATHGGS FTCGPDRIDE RFRRLSLSSL AADDRLPPPR  180
AQFEMNSLQR FRGCKGRGGD AAGRRGSCRC RRSYRHLIEK RLCRDQGTLI CPLVAASPAF  240
SCRVGCLHNR GFVVVALRAR AGHRILLRGC RRAPPSTAAC EAAALRHPLS RRCSRAPPSH  300
ACDAIALSEV STARRYALHG DEATTDGAAA VWPGELDEQL ISELLSDDSL LGALHGPTGD  360
SAHYCSGDAG PVDAAAPAPC NSGGDGTAAE REVPQPAAVN RALCSVYSGP TIQDIEKALS  420
SSRPCHWMSN RRYSSSIGRF GATSTAPESK YTTKVRTCAG KMPSDGFKWR KYGQKSIKNN  480
PYPRSYYKCT SSRCGAKKHV EKSVDDPEML IVTYEGPHLH GPQPPFPRRQ WTSADFLSGA  540
AATRRGAEAP SPPLTASSGG AHPNNQPHTC DAAAGARGGG VSVVADGREN GRAEADVVVK  600
ATRWCDGCSG ASVAAPGDGT TLPCDSPPTT WSCPDSYFSS WSLEALLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-204625201674Probable WRKY transcription factor 4
2lex_A1e-204625201674Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016164e-87FP101616.1 Phyllostachys edulis cDNA clone: bphyem119j23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7DEI56e-96A0A2T7DEI5_9POAL; Uncharacterized protein
STRINGSb03g039550.17e-87(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131442633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-30WRKY DNA-binding protein 49