PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00009.1.g06900.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 228aa MW: 24986 Da PI: 8.2535 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.1 | 3.9e-28 | 116 | 169 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt eLH+rF+e+v+qL G + A+Pk+i+++m+v+g+t+ehv+SHLQkYRl Zjn_sc00009.1.g06900.1.am.mkhc 116 KARMVWTAELHHRFIEVVAQL-GDKAAVPKAIVQVMNVEGITREHVASHLQKYRL 169 68*******************.99******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.774 | 111 | 172 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.87E-18 | 114 | 173 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.5E-28 | 114 | 173 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-23 | 116 | 169 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.0E-9 | 118 | 168 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MSSPRGGRPR DSPSPSSTSS PPPPPDMGTG RSECDRVLEW ESGLPTAAEL TPLSRPLIPR 60 ALAAAFRIGG VAGASDSPTS QLSLPWDDDD DDDEEEDRDR EMENAATGGG KPGKKKARMV 120 WTAELHHRFI EVVAQLGDKA AVPKAIVQVM NVEGITREHV ASHLQKYRLY LKRTRTTHAA 180 PPRLRVMPPT HGFSFSSQQS TDASERSDYC EKLQATRRRT SSPAVFKM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-23 | 116 | 172 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815041.1 | 1e-54 | transcription factor PCL1-like | ||||
Swissprot | Q94DH3 | 4e-36 | PCL1_ORYSJ; Transcription factor PCL1 | ||||
TrEMBL | A0A2T7DEH6 | 1e-53 | A0A2T7DEH6_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DEJ3 | 1e-53 | A0A2T7DEJ3_9POAL; Uncharacterized protein | ||||
STRING | Si002016m | 5e-52 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59570.1 | 3e-25 | G2-like family protein |