PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00009.1.g03990.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 340aa MW: 36468.8 Da PI: 7.1388 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 156 | 178 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cg++F r +L H r H Zjn_sc00009.1.g03990.1.sm.mk 156 HTCDICGRVFARGVQLGGHKRAH 178 79**************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.63E-6 | 152 | 183 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-4 | 156 | 182 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 5.0E-8 | 156 | 180 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.3 | 156 | 183 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 158 | 178 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MDPSSSSSRR HRRGADGDAE DIEEGEYVPG EPSSSSDTDG DFHWYSLQSR PRAGETGPPQ 60 PSRTLEEIYA KGKEVMPPLP RPSSVGETDG TISDAFGRCN LPFLVPARTN RDNSAERSSP 120 PSVQNEPATS VANSSNNIAK PAARKKKMQL MQEQGHTCDI CGRVFARGVQ LGGHKRAHYG 180 KKIEYKKRKK QCVEPPPQLV DPPAPLAAPA TAVCMADLTR SMDMQTGQPS HSSPPPQVVA 240 PPAPLASPAA VCMVDPTGNQ TEQPSDSSPQ PVVTILRLFG TNIMPGAPAV QEGNGIMPQA 300 EAPEKGSGAT EDLPSTRRQS LNIYHAYGFC LRKVQITQDN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 189 | KKRKK |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP33219 | 3 | 4 |