PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00009.1.g03980.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 804aa MW: 86139.1 Da PI: 9.3901

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00009.1.g03980.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.1	2.6e-42	554	652	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrrkC++dCv+apyfp ++++kf vh++FGasnv+kll++l+e +reda++sl+yeA++r+rdPvyG+vgvi+ Zjn_sc00009.1.g03980.1.am.mk 554 PCAACKFLRRKCQPDCVFAPYFPPDNTQKFVHVHRVFGASNVTKLLNELQEFQREDAVNSLAYEADMRLRDPVYGCVGVIS 634 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallke 99 lq++l+ql++ela++k Zjn_sc00009.1.g03980.1.am.mk 635 VLQHNLRQLQQELARAKY 652 ***********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.936	553	654	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-42	554	650	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence Send to blast
MTVVTDRLGA LSDELIQSTT STNRLDPSST AAAAPALLQY LLVRGEIGHA QDDGRFSVTV 60 LPAHPFMAGG VNPAGDEARH AGAGQDDTHT THSFARRPGV GSFPRAPNSQ DLSLPVHDQS 120 IDRLPVCAAI HRAEGRGVWE TPSPWMMEPF RSSLAAGRKQ GTVELKARVL RSRQQGKGGG 180 GGPSARMLGW RETEEEVMGR LEATCRAFIL ISTPEDDDDA ECQPAGQGCR ARRTERRSTA 240 RASRPSHRAS NNFVVIPYRP PCLHIAPIRA AHAAGVRAWG RVRRASTLVC PPTRKRVVEA 300 CGPRAPDPED DDGGKGVVAR SHFLFLAPAD MAADRTGRIG VTNSYSMARV RAPSLPPERD 360 PDRSIMHHLL LFLLRARAFN LHCGLVQSDV LRPGWLNAPG RLLAHILSTV HAAAEERRGE 420 REEACLKGEA AAAAAVPRAE WKARGPASKK TRPERRQPRS RQGRDSGGDH HHHHHPKKGY 480 VHAQPFAGGG GSDNILHSLR DPLLPSSTRS REPDRSQMAS SSASSMPTPS GSLITVAASS 540 TSAAAAAVCG TGSPCAACKF LRRKCQPDCV FAPYFPPDNT QKFVHVHRVF GASNVTKLLN 600 ELQEFQREDA VNSLAYEADM RLRDPVYGCV GVISVLQHNL RQLQQELARA KYELSKYQVI 660 DSLIIHLASI YAPDRFILIT LTVADLLRFL VQQAAAAAAA ANASTGPNGP QPMAEFIGNG 720 MPNGGHNFIN IGHSPALGSI GVFGQDHFAN AQMLSRNYDG GYEFGYPATM GGNGGPASSL 780 GSLGVNSFLK SGTAGGDDKP SAGQ

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence Send to blast

MTVVTDRLGA LSDELIQSTT STNRLDPSST AAAAPALLQY LLVRGEIGHA QDDGRFSVTV  60
LPAHPFMAGG VNPAGDEARH AGAGQDDTHT THSFARRPGV GSFPRAPNSQ DLSLPVHDQS  120
IDRLPVCAAI HRAEGRGVWE TPSPWMMEPF RSSLAAGRKQ GTVELKARVL RSRQQGKGGG  180
GGPSARMLGW RETEEEVMGR LEATCRAFIL ISTPEDDDDA ECQPAGQGCR ARRTERRSTA  240
RASRPSHRAS NNFVVIPYRP PCLHIAPIRA AHAAGVRAWG RVRRASTLVC PPTRKRVVEA  300
CGPRAPDPED DDGGKGVVAR SHFLFLAPAD MAADRTGRIG VTNSYSMARV RAPSLPPERD  360
PDRSIMHHLL LFLLRARAFN LHCGLVQSDV LRPGWLNAPG RLLAHILSTV HAAAEERRGE  420
REEACLKGEA AAAAAVPRAE WKARGPASKK TRPERRQPRS RQGRDSGGDH HHHHHPKKGY  480
VHAQPFAGGG GSDNILHSLR DPLLPSSTRS REPDRSQMAS SSASSMPTPS GSLITVAASS  540
TSAAAAAVCG TGSPCAACKF LRRKCQPDCV FAPYFPPDNT QKFVHVHRVF GASNVTKLLN  600
ELQEFQREDA VNSLAYEADM RLRDPVYGCV GVISVLQHNL RQLQQELARA KYELSKYQVI  660
DSLIIHLASI YAPDRFILIT LTVADLLRFL VQQAAAAAAA ANASTGPNGP QPMAEFIGNG  720
MPNGGHNFIN IGHSPALGSI GVFGQDHFAN AQMLSRNYDG GYEFGYPATM GGNGGPASSL  780
GSLGVNSFLK SGTAGGDDKP SAGQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-47	550	657	7	114	LOB family transfactor Ramosa2.1
5ly0_B	6e-47	550	657	7	114	LOB family transfactor Ramosa2.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF081454	1e-139	EF081454.1 Zea mays indeterminate gametophyte 1 (IG1) gene, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2267	38	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	2e-50	LBD family protein