PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00009.1.g03510.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 227aa MW: 24365.2 Da PI: 6.2378 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 24.8 | 2.5e-08 | 153 | 207 | 1 | 55 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 lv+lL++cAeav+ +d ++a alL +l+ a +g+++qR+a ++ ++ +++ Zjn_sc00009.1.g03510.1.am.mk 153 LVQLLVACAEAVACRDRAQAAALLRELQASAPVHGTAFQRVARTGLKTRHHCISD 207 689***************************************9877766666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 8.7E-6 | 153 | 207 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MGASEQLCNS TANSFSSSYV YSEQNLHLAP QDASPFSDHG LGFPSYYGCT DQSEVPFDGD 60 EVNLGFRASK ATRVDYISSP YGHPPMVRAD LASESSRVRK KRYWDLLESC KQKVEAMEAM 120 ESPVLADQES PDGFGMADGG VTRGGGGADG MRLVQLLVAC AEAVACRDRA QAAALLRELQ 180 ASAPVHGTAF QRVARTGLKT RHHCISDSVC SAPRAGEAMR PRKAPDT |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367029 | 2e-43 | AK367029.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2050E06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814052.1 | 3e-60 | DELLA protein RGL1-like | ||||
TrEMBL | A0A2T7DCV4 | 5e-59 | A0A2T7DCV4_9POAL; Uncharacterized protein | ||||
STRING | Si000959m | 2e-59 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5640 | 33 | 54 |