PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00009.1.g01160.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 113aa MW: 13070 Da PI: 9.919 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 124 | 1.8e-38 | 1 | 108 | 267 | 374 |
GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 lfd+le+ ++r s er+ vEr +lg+ei+n+vac gaerrerhe+l +W +r+e aGF+ vpls++a qa++ + + d Zjn_sc00009.1.g01160.1.am.mk 1 LFDCLEVVAARGSVERARVERWMLGEEIKNIVACDGAERRERHERLDRWARRMEGAGFGRVPLSYYALLQARRAAQGLGCD 81 7******************************************************************************** PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374 g++v e +gs++l+W+dr+++svSaWr Zjn_sc00009.1.g01160.1.am.mk 82 GFKVREAKGSFFLCWQDRAIFSVSAWR 108 **************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 16.664 | 1 | 88 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.2E-36 | 1 | 108 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
LFDCLEVVAA RGSVERARVE RWMLGEEIKN IVACDGAERR ERHERLDRWA RRMEGAGFGR 60 VPLSYYALLQ ARRAAQGLGC DGFKVREAKG SFFLCWQDRA IFSVSAWRGR RFD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-15 | 1 | 108 | 265 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287540 | 1e-128 | AK287540.1 Oryza sativa Japonica Group cDNA, clone: J065011K01, full insert sequence. | |||
GenBank | AP003259 | 1e-128 | AP003259.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466H10. | |||
GenBank | AP014957 | 1e-128 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971220.1 | 6e-71 | scarecrow-like protein 3 | ||||
Refseq | XP_022682001.1 | 6e-71 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 3e-45 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A287MKE6 | 8e-71 | A0A287MKE6_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A368RFP6 | 1e-69 | A0A368RFP6_SETIT; Uncharacterized protein | ||||
TrEMBL | A0A453GM99 | 8e-71 | A0A453GM99_AEGTS; Uncharacterized protein | ||||
TrEMBL | K3XHR4 | 2e-70 | K3XHR4_SETIT; Uncharacterized protein | ||||
STRING | Si001436m | 3e-71 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 8e-37 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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