PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00008.1.g11290.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 531aa MW: 57315.6 Da PI: 7.9831

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00008.1.g11290.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.3	8.6e-19	141	209	1	47
TSSS-HHHHHHHHHHHHHTTTT.......................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.......................tWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEde+lv ++k++G g +W++Ia++++ gRt++++k++w+++ Zjn_sc00008.1.g11290.1.am.mk 141 KGPWTAEEDEKLVAYIKKHGQGnwrtlpknaaslaslpprdttvvRWSAIAARLP-GRTDNEIKNYWNTH 209 79***************************************************.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-23	132	218	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.185	136	214	IPR017930	Myb domain
SuperFamily	SSF46689	1.76E-14	138	206	IPR009057	Homeodomain-like
SMART	SM00717	5.4E-19	140	212	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-15	141	209	IPR001005	SANT/Myb domain
CDD	cd00167	1.28E-13	143	210	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MPPGHGVDSP SRSEAVGLCS ALFCSSSADV SAANARPAAS YSPFHPPSPD ASLSRPPWPR 60 RARGAQRPAP NPVDFAGYPS RSRAYKAGAP SHLLLDLLSL FSSHSAIHKP GLFPHDPIRL 120 RAGIELQMGR APCCDKTGLK KGPWTAEEDE KLVAYIKKHG QGNWRTLPKN AASLASLPPR 180 DTTVVRWSAI AARLPGRTDN EIKNYWNTHI RKRLLRMGID PVTHAPRLDL LDLSGLLKPA 240 AHAAPAYYPT QADLDALRAL EPLASYPDLL RLASTLLSGT VQAPAVADQQ LLLPWLLHQA 300 QMTQQAAAMA PQEVVPMQAD HQFMQPAASN APCQVPGLVH TNQTTIQQTG AAQQQQLQDI 360 PAASSYVDSL LDMPALMQMV QQQQSDASNM QQHWSSTATS SNNNVGGSGV STPSSSPVTR 420 LSNNNSTTST TTTYGATTTN DAATLFNMPL SDLLDVSDYI VAEVASDDWL RRPLSLSFRI 480 TASSPVKKNR ARSEAIRHQG VEYAYTDQTN TPPAEPIDLN PPQPPPPLVW E

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MPPGHGVDSP SRSEAVGLCS ALFCSSSADV SAANARPAAS YSPFHPPSPD ASLSRPPWPR  60
RARGAQRPAP NPVDFAGYPS RSRAYKAGAP SHLLLDLLSL FSSHSAIHKP GLFPHDPIRL  120
RAGIELQMGR APCCDKTGLK KGPWTAEEDE KLVAYIKKHG QGNWRTLPKN AASLASLPPR  180
DTTVVRWSAI AARLPGRTDN EIKNYWNTHI RKRLLRMGID PVTHAPRLDL LDLSGLLKPA  240
AHAAPAYYPT QADLDALRAL EPLASYPDLL RLASTLLSGT VQAPAVADQQ LLLPWLLHQA  300
QMTQQAAAMA PQEVVPMQAD HQFMQPAASN APCQVPGLVH TNQTTIQQTG AAQQQQLQDI  360
PAASSYVDSL LDMPALMQMV QQQQSDASNM QQHWSSTATS SNNNVGGSGV STPSSSPVTR  420
LSNNNSTTST TTTYGATTTN DAATLFNMPL SDLLDVSDYI VAEVASDDWL RRPLSLSFRI  480
TASSPVKKNR ARSEAIRHQG VEYAYTDQTN TPPAEPIDLN PPQPPPPLVW E

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012615	4e-99	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802158.1	1e-108	transcription factor MYB102-like
TrEMBL	A0A2S3H3C9	1e-107	A0A2S3H3C9_9POAL; Uncharacterized protein
STRING	MLOC_62436.1	1e-106	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP79	38	563

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-45	MYB-like 102