PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00008.1.g10790.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 544aa MW: 58306 Da PI: 10.5809

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00008.1.g10790.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.8	4.4e-53	166	294	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sg Zjn_sc00008.1.g10790.1.am.mk 166 LPPGFRFHPTDEELVVHYLKKKTASMPLPV-TIIAEVDLYKFDPWELPAKASFGEHEWYFFSPRDRKYPNGARPNRAATSG 245 79**************************.89***********9989999********************** PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg+dk++l++ ++ +vg+kk Lvfy+g+ pkg kt+W+mheyrl Zjn_sc00008.1.g10790.1.am.mk 246 YWKATGTDKPILASdgSRLKVGVKKALVFYRGKPPKGIKTNWIMHEYRL 294 *********9555556*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-63	162	333	IPR003441	NAC domain
PROSITE profile	PS51005	61.241	166	333	IPR003441	NAC domain
Pfam	PF02365	2.3E-27	167	294	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence Send to blast
MPPRVVLFMG RVRLLGQVRP AGSHGMDEDR RTALTRICVA ETGQGRPGFA RVTGTARARG 60 CGRWLANTGY GWRRANVSSG ERPGPLASVS GQLSSLQRRK RDPKPPAKIP ARITRPPASP 120 PARPNRHRNK PGPPRRCPTM RSMESTDSSS GSALPQQKQP GPAPHLPPGF RFHPTDEELV 180 VHYLKKKTAS MPLPVTIIAE VDLYKFDPWE LPAKASFGEH EWYFFSPRDR KYPNGARPNR 240 AATSGYWKAT GTDKPILASD GSRLKVGVKK ALVFYRGKPP KGIKTNWIMH EYRLTDAASF 300 ANTSRPPPGS GGGGKTAASL RLDDWVLCRI YKKVNKHGGF GDQLRSMECG EDSVEDAVAA 360 AYHPSTHAAA GNMVIAGGGN YTSLLHHDDN NFLDGLLTVE DGGLSGAATS SLRQIAAAAR 420 AGPAVTKQLL VPASAPFNWL DASAIAILPS PKRYHGFSKE ATDGGSSSLS SPAERNHLAA 480 PGAGTIDGGT TAAIPTFLNP LGVQVQQSAA FHHHANILGT SLPPETASCA FQNPYQFSGV 540 NWNP

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence Send to blast

MPPRVVLFMG RVRLLGQVRP AGSHGMDEDR RTALTRICVA ETGQGRPGFA RVTGTARARG  60
CGRWLANTGY GWRRANVSSG ERPGPLASVS GQLSSLQRRK RDPKPPAKIP ARITRPPASP  120
PARPNRHRNK PGPPRRCPTM RSMESTDSSS GSALPQQKQP GPAPHLPPGF RFHPTDEELV  180
VHYLKKKTAS MPLPVTIIAE VDLYKFDPWE LPAKASFGEH EWYFFSPRDR KYPNGARPNR  240
AATSGYWKAT GTDKPILASD GSRLKVGVKK ALVFYRGKPP KGIKTNWIMH EYRLTDAASF  300
ANTSRPPPGS GGGGKTAASL RLDDWVLCRI YKKVNKHGGF GDQLRSMECG EDSVEDAVAA  360
AYHPSTHAAA GNMVIAGGGN YTSLLHHDDN NFLDGLLTVE DGGLSGAATS SLRQIAAAAR  420
AGPAVTKQLL VPASAPFNWL DASAIAILPS PKRYHGFSKE ATDGGSSSLS SPAERNHLAA  480
PGAGTIDGGT TAAIPTFLNP LGVQVQQSAA FHHHANILGT SLPPETASCA FQNPYQFSGV  540
NWNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-69	156	333	7	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-69	156	333	7	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-69	156	333	7	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-69	156	333	7	165	NO APICAL MERISTEM PROTEIN
4dul_A	1e-69	156	333	7	165	NAC domain-containing protein 19
4dul_B	1e-69	156	333	7	165	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00058	PBM	Transfer from AT1G61110	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802635.1	0.0	NAC transcription factor NAM-B2-like
Swissprot	A0SPJ9	1e-161	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A0H4KD06	0.0	A0A0H4KD06_MAIZE; NAC transcription factor
STRING	Pavir.J08552.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7572	36	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	4e-90	NAC domain containing protein 25

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]