PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00008.1.g10410.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | YABBY | ||||||||
Protein Properties | Length: 177aa MW: 19295 Da PI: 4.685 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 50.2 | 1.1e-15 | 15 | 66 | 6 | 53 |
YABBY 6 sseqvCyvqCnfCntilavsvPsts....lfkvvtvrCGhCtsllsvnlaka 53 seq+ yvqC+fC+til+vsvPs s l k+v+v+CG C+ +lsv+l + Zjn_sc00008.1.g10410.1.sm.mk 15 LSEQLGYVQCSFCTTILLVSVPSYSdalqLTKTVAVQCGNCAGVLSVTLPPQ 66 689*******************9875555789***************99765 PP | |||||||
2 | YABBY | 58.1 | 3.8e-18 | 105 | 170 | 108 | 159 |
YABBY 108 evprvppvirPPekrqrvPsaynrfik..............eeiqrikasnPdishreafsaaakn 159 v pv++PP +rqr Psayn+fik eei+rik ++P+ish++afsaa+kn Zjn_sc00008.1.g10410.1.sm.mk 105 AEDVVFPVNKPPVRRQRTPSAYNCFIKwvcgisnvvqnvirEEIRRIKEKDPSISHKQAFSAASKN 170 2334679******************87777777777777779***********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.9E-22 | 16 | 131 | IPR006780 | YABBY protein |
Pfam | PF04690 | 3.3E-9 | 142 | 170 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MSSSPECSPC LGILLSEQLG YVQCSFCTTI LLVSVPSYSD ALQLTKTVAV QCGNCAGVLS 60 VTLPPQTPTP VVELRLPLQE PGVDPPPRES EDESSGEDRE LEAEAEDVVF PVNKPPVRRQ 120 RTPSAYNCFI KWVCGISNVV QNVIREEIRR IKEKDPSISH KQAFSAASKN LFGATAY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958092.1 | 1e-58 | protein YABBY 7 | ||||
Swissprot | A2PZN8 | 7e-35 | YAB7_ORYSJ; Protein YABBY 7 | ||||
TrEMBL | A0A368Q749 | 2e-58 | A0A368Q749_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ba00601.1.p | 2e-56 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13625 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 2e-20 | YABBY family protein |