PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g09910.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 548aa    MW: 60858.9 Da    PI: 9.4582
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g09910.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.8e-0682104123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     ++C+ Cgk F r  nL+ H r H
  Zjn_sc00008.1.g09910.1.am.mkhc  82 FVCEVCGKGFQRDQNLQLHRRGH 104
                                     89*******************88 PP
2zf-C2H217.31.3e-05160182123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     ++Cp Cgk++  + +Lk H +t+
  Zjn_sc00008.1.g09910.1.am.mkhc 160 WTCPRCGKRYAVQADLKAHAKTC 182
                                     58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.1E-681104No hitNo description
SMARTSM003550.01482104IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-582104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.63582104IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SMARTSM00355170125155IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-5148181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.1E-6155180No hitNo description
SMARTSM0035563160180IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704160188IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
LREPAREVGF SEAASGARRE RGGRQIERER MTRNPTEPEA GPGPAEAPAA PVKKKRNLPG  60
TPDPEAEVIA LSPGTLLATN RFVCEVCGKG FQRDQNLQLH RRGHNLPWRL RQRGPGAAPP  120
RRRVYVCPEP GCVHHCPTRA LGDLTGIKKH FCRKHGEKRW TCPRCGKRYA VQADLKAHAK  180
TCGTREYRCD CGTLFTRRDS FVTHRAFCGA LVEETGRALT VPAPPSPHPP DLEAEENVEK  240
DKEKREEEKN DNSAVAEKEQ LPQVEAATQK PPCIPSPPPL PKEPQHPQYN PSPTPVAQDP  300
LPLRSRPLLH LEPQPLHSRP PFPKEHHQPV VALLPNVDAP HMSATALLQK ATEVGASQSS  360
SSFLKEFGLG SSSSSSPPSK VPQGRFTENS TQHWHHRSNQ QMEMEHYQSN QRMEMERYQS  420
NQRMEMEQPR SRQQHHRRSN QQMEMELRNQ QMEMNPRPML SSSLGLGLAY QSGNSAMPDL  480
MMGPSPLFGP KPATLDFLGL GIGGTIGSST ANGGLPALMM RGELDMGSAQ SRAPWDDGKR  540
KTNGRTIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-29156217364Zinc finger protein JACKDAW
5b3h_F4e-29156217364Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0663580.0BT066358.1 Zea mays full-length cDNA clone ZM_BFc0009B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802400.11e-129protein indeterminate-domain 1-like
TrEMBLA0A2T7EXX21e-128A0A2T7EXX2_9POAL; Uncharacterized protein
STRINGSb02g037550.11e-128(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3317522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.13e-93C2H2 family protein