PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00008.1.g09790.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YC | ||||||||
Protein Properties | Length: 201aa MW: 22238.3 Da PI: 5.0209 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 151 | 2.2e-47 | 53 | 155 | 2 | 101 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdi 79 l++fwe+q i+ +tdfkn +lPlarikki++adedv+mi+ ea ++++acelfilelt rsw ha+en+rrtl+ksdi Zjn_sc00008.1.g09790.1.sm.mk 53 LQAFWEEQereIKATTDFKNLNLPLARIKKIMRADEDVRMIAVEALFVFARACELFILELTHRSWAHAQENQRRTLQKSDI 133 89****99988999******************************************************************* PP NF-YC 80 aaavtrtdifdflvdivprdel 101 aaa++rt++fdflvdivprd+ Zjn_sc00008.1.g09790.1.sm.mk 134 AAAIARTEVFDFLVDIVPRDDA 155 *******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.86E-28 | 50 | 146 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.7E-20 | 74 | 137 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 7.5E-35 | 75 | 152 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MDPSNSSTPP PHPVMGAPVA YPPAAYPPGA PAYDPQFYAP PPAQQAVAAQ QKLQAFWEEQ 60 EREIKATTDF KNLNLPLARI KKIMRADEDV RMIAVEALFV FARACELFIL ELTHRSWAHA 120 QENQRRTLQK SDIAAAIART EVFDFLVDIV PRDDAKYAEA AAAAAAAAIP YPVAAVPSGQ 180 LVSLATDPLA YYYFPRHWDF D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-46 | 60 | 152 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 130 | RRTLQKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100449 | 1e-122 | FP100449.1 Phyllostachys edulis cDNA clone: bphyst023f20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611933.1 | 3e-67 | nuclear transcription factor Y subunit C-6-like | ||||
Swissprot | Q9XE33 | 1e-59 | NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | C5YJA9 | 1e-65 | C5YJA9_SORBI; Uncharacterized protein | ||||
TrEMBL | Q0J0W2 | 1e-65 | Q0J0W2_ORYSJ; Os09g0480700 protein (Fragment) | ||||
STRING | OS09T0480700-01 | 2e-66 | (Oryza sativa) | ||||
STRING | Sb07g028600.1 | 2e-66 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3856 | 36 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 2e-51 | nuclear factor Y, subunit C3 |
Publications ? help Back to Top | |||
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