PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00008.1.g08010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 347aa MW: 39189.7 Da PI: 6.6517 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.8 | 7.6e-52 | 10 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+ ++ + ++ewyfFs++dkky+tg+r+nrat Zjn_sc00008.1.g08010.1.am.mk 10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQSEWYFFSHKDKKYPTGTRTNRAT 89 69****************************.9***************943444442455********************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+Wkatg+dk+++ + +gl+ktLvfy grap+g+ktdW+mheyrl Zjn_sc00008.1.g08010.1.am.mk 90 MAGFWKATGRDKAIFLGNAGRIGLRKTLVFYIGRAPHGKKTDWIMHEYRL 139 ****************9999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-58 | 4 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.424 | 10 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-27 | 11 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003002 | Biological Process | regionalization | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0010455 | Biological Process | positive regulation of cell fate commitment | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MHPSSGSMSV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREIDLNKL EPWDLKDRCR 60 IGTGPQSEWY FFSHKDKKYP TGTRTNRATM AGFWKATGRD KAIFLGNAGR IGLRKTLVFY 120 IGRAPHGKKT DWIMHEYRLD EENVEVQEDG WVVCRVFKKK NYQRGLNPAE MAMVDDDELP 180 PLPVPVPGSM PAEHKQNPHL MHYDFPSFDP SMQLPQLMNA DQPVAALLSS QPSIAMGMSS 240 LDVECTQNLM KLTANSSQEM LHEGGGGGVD RFIPGTTDWS ILDKLLASHQ NLDQLFQGKQ 300 LVTAASAAPM VPYHQQLMEL GDTSSSLQRL PLRYLGGEAA DHLRFPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-51 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-51 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-51 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-51 | 8 | 161 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-51 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swm_B | 9e-51 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swm_C | 9e-51 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swm_D | 9e-51 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swp_A | 9e-51 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swp_B | 9e-51 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swp_C | 9e-51 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
3swp_D | 9e-51 | 8 | 161 | 18 | 170 | NAC domain-containing protein 19 |
4dul_A | 9e-51 | 8 | 161 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 9e-51 | 8 | 161 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00250 | DAP | Transfer from AT1G79580 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965525.1 | 0.0 | NAC domain-containing protein 76 | ||||
Swissprot | Q5Z6B6 | 1e-121 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | K3Y0W1 | 0.0 | K3Y0W1_SETIT; Uncharacterized protein | ||||
STRING | Si007822m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-106 | NAC family protein |
Publications ? help Back to Top | |||
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