PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g07030.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 472aa    MW: 51887.1 Da    PI: 7.149
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g07030.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.81.1e-301742642101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl k++e++ed++++ ++sw +  nsfvv+d++ fa ++Lp+ Fkh nf+ F+RQLn+YgF+kv+ ++         weF+
  Zjn_sc00008.1.g07030.1.am.mk 174 FLAKTFELVEDPATDGVVSWGAARNSFVVWDPHAFAARLLPRRFKHANFSTFLRQLNTYGFRKVSADK---------WEFA 245
                                   9********************999******************************************99.........**** PP

                                   ESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkk 101
                                   h  F +g+++ll +i+r++
  Zjn_sc00008.1.g07030.1.am.mk 246 HADFLAGQRHLLANIRRRR 264
                                   *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.9E-50170263IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.4E-30171263IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-33171263IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.2E-15174197IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-27174263IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-15212224IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-15225237IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MHCGSVPGEQ REVPHEGQGG RSRHAPELPS TTRRSRARRR RRRHSTPPWR CTELMSIKSN  60
GHARREHQRM NLRSGDSGVR SQDPARSSGR EKLPQKISRA TRSLFLSFSY FPEPPGATAF  120
FCSMEKRAAA TVKQEQHDDG EVVVLDGDGE GWPRGKAPAP LEALSSVAPA VAPFLAKTFE  180
LVEDPATDGV VSWGAARNSF VVWDPHAFAA RLLPRRFKHA NFSTFLRQLN TYGFRKVSAD  240
KWEFAHADFL AGQRHLLANI RRRRGAAGSS TSPSSGESGS GHGIGEVERL RRDREALARE  300
LARLQREQQE ARAALLDMER RVRGTERRQE QCTAFLARAV ANPGFLDGLL ARRDAAAAEG  360
GRKRRLLDAA PPDVAAEVLV FEEMALAAGA EIEVEPAFLA PTASRSAGGT ATDMIWYELL  420
GEEQAEIDVE VEELLAATTA AEAAAAPWEE MGEEEVQELV QEIDCLGSPT SF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-231492634129Heat shock factor protein 1
5d5v_B5e-231492634129Heat shock factor protein 1
5d5v_D5e-231492634129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13342RSRARRRRRR
2288293RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727012e-85AK372701.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3009M23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001356225.11e-135heat shock factor protein HSF30
SwissprotQ5Z6A41e-107HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLB6TKC41e-137B6TKC4_MAIZE; Heat shock factor protein HSF30
STRINGGRMZM2G173090_P011e-135(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-44heat shock transcription factor A2