PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g05530.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 442aa    MW: 47152.6 Da    PI: 8.4009
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g05530.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS277.63.8e-8512544266374
                          GRAS  66 psetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslR 143
                                   +s+++    + +  a+ +f+++ P+l+f+hltaNqaIl+aveg++r+Hi+D+d+ +G+QWp+Llqa+++R+   +gpp++R
  Zjn_sc00008.1.g05530.1.am.mk 125 SSSSAAAARTVSSGAYLAFNQIAPFLRFAHLTANQAILDAVEGARRIHILDLDAAHGVQWPPLLQAISERAdpaAGPPEVR 205
                                   333333335666677888****************************************************988888***** PP

                          GRAS 144 iTgvgspesgskeeleetgerLakfAeelgvpfefnvl.............vakrledleleeLrvkpgEalaVnlvlqlh 211
                                   iTg g+    ++++l +tg+rL+ fA+++++pf f++l             +++++++    +L+++p+E+laVn+v+ lh
  Zjn_sc00008.1.g05530.1.am.mk 206 ITGAGA----DRDTLLRTGSRLSAFARSIHLPFCFTPLllscatsnqevagASTTTDSCVATTLELHPDETLAVNCVMFLH 282
                                   ******....9***************************999999999887666678888899******************* PP

                          GRAS 212 rlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikvEre 288
                                   +l   +    +e  ++Lk vk +sP vv+++e+e   ++     ++ +r++ a+++ysa+f++lea++p+ s+er  vE+e
  Zjn_sc00008.1.g05530.1.am.mk 283 KLG-GP----DELAAFLKWVKAMSPAVVTMAEREPAGGGWdrvdELPRRVAVAMDHYSAVFEALEATVPPGSRERLLVEQE 358
                                   **8.33....33467*******************55533224449************************************ PP

                          GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                                   +lgrei+ +++ +g +     + le+W ++ ++aGF+p +ls +a++qa+lllr ++ s+gy v+e +g+ +lgW++rpL+
  Zjn_sc00008.1.g05530.1.am.mk 359 VLGREIEAALSYSGGR---WWRGLERWGAAARAAGFTPRSLSAFAVSQARLLLRLHYpSEGYLVQEARGACFLGWQTRPLL 436
                                   ************9998...7899********************************************************** PP

                          GRAS 369 svSaWr 374
                                   svS+W+
  Zjn_sc00008.1.g05530.1.am.mk 437 SVSSWQ 442
                                   *****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.85742421IPR005202Transcription factor GRAS
PfamPF035141.3E-82125442IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MPATFLLIHP LMLLASHHHR RLRPPPPLLQ VKKRAWAAAA GKATAMLGSL HHSSSSSDTD  60
NDNKNGNTNT DNNNNASGVL AAVPSARDLV LACADLLQRG DLQAARRAAG ASGRVAPGLL  120
PSSSSSSSAA AARTVSSGAY LAFNQIAPFL RFAHLTANQA ILDAVEGARR IHILDLDAAH  180
GVQWPPLLQA ISERADPAAG PPEVRITGAG ADRDTLLRTG SRLSAFARSI HLPFCFTPLL  240
LSCATSNQEV AGASTTTDSC VATTLELHPD ETLAVNCVMF LHKLGGPDEL AAFLKWVKAM  300
SPAVVTMAER EPAGGGWDRV DELPRRVAVA MDHYSAVFEA LEATVPPGSR ERLLVEQEVL  360
GREIEAALSY SGGRWWRGLE RWGAAARAAG FTPRSLSAFA VSQARLLLRL HYPSEGYLVQ  420
EARGACFLGW QTRPLLSVSS WQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4413944198378Protein SCARECROW
5b3h_A9e-4513944197377Protein SCARECROW
5b3h_D9e-4513944197377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP8765580.0KP876558.1 Saccharum hybrid cultivar ROC22 monoculm 1 (MOC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810768.10.0protein MONOCULM 1-like
RefseqXP_025810769.10.0protein MONOCULM 1-like
SwissprotQ84MM91e-166MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A3L6PE740.0A0A3L6PE74_PANMI; Protein MONOCULM 1-like
STRINGSi008068m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-74GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]