PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g05150.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 272aa    MW: 28431.6 Da    PI: 9.7834
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g05150.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.6e-07630226
                                    -S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                    k ++C  f+ t  C++G++C+F H 
  Zjn_sc00008.1.g05150.1.sm.mkhc  6 KSKPCTKFFSTAGCPFGASCHFLHN 30
                                    7789********************7 PP
2zf-CCCH24.64.3e-087297227
                                    -S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                    kt+lC+ +     Ck G++C+FaHg+
  Zjn_sc00008.1.g05150.1.sm.mkhc 72 KTRLCNKYNTAEGCKWGSKCHFAHGE 97
                                    9***********************96 PP
3zf-CCCH35.51.7e-11238263127
                                     --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                     +kt+lC +f + G C +G+rC+FaHg+
  Zjn_sc00008.1.g05150.1.sm.mkhc 238 FKTKLCENFNK-GSCTFGERCHFAHGE 263
                                     69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575125No hitNo description
SMARTSM003560.3431IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915432IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-5630IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6632IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-8630IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-1467102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-869101IPR000571Zinc finger, CCCH-type
SMARTSM003560.0867097IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9817098IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-57297IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.19E-13139211IPR004088K Homology domain, type 1
SMARTSM003222.4E-9141211IPR004087K Homology domain
PROSITE profilePS5008414.194142206IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.0E-14142210IPR004088K Homology domain, type 1
PfamPF000134.6E-10144207IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.5E-17235270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-9237268IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-7237263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317237264IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9238263IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGVGSKSKPC TKFFSTAGCP FGASCHFLHN FPGGYQAVAK MTNLGGPPVP SPMGRMPMGP  60
GAPDGPPTPS LKTRLCNKYN TAEGCKWGSK CHFAHGEREL GKPMPMNNSM GGPPMGPGPN  120
GHFMPPPMPV PDMVPPSTFG ASATAKISVD ASLAGGIIGK GGINTKHISR VTGAKLAIRD  180
NEADPNLKNI ELEGTFDQIK HASAMVTELI VRIGGKAPQQ AKNNPGRGFH AGGPGSNFKT  240
KLCENFNKGS CTFGERCHFA HGEDELRKPP AS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810913.11e-167zinc finger CCCH domain-containing protein 44-like
SwissprotQ69XQ31e-158C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A3L6S1111e-172A0A3L6S111_PANMI; Zinc finger CCCH domain-containing protein 44-like isoform X1
STRINGPavir.Db00748.1.p1e-165(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-43C3H family protein