PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00008.1.g04190.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 411aa MW: 45286.1 Da PI: 6.4378 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.9e-18 | 112 | 158 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +lv++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l Zjn_sc00008.1.g04190.1.am.mkhc 112 KGQWTPEEDRKLVKLVEQFGLRKWSCIAQILP-GRVGKQCRERWHNHL 158 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 166 | 206 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W+ eEd l++a+k+ G++ W+ Ia++++ gRt++++k++w+ Zjn_sc00008.1.g04190.1.am.mkhc 166 IWSDEEDMVLIQAHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 206 6*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.487 | 107 | 162 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.25E-31 | 109 | 205 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 111 | 160 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-29 | 113 | 166 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.56E-15 | 115 | 158 | No hit | No description |
Pfam | PF13921 | 1.2E-18 | 115 | 172 | No hit | No description |
PROSITE profile | PS51294 | 19.544 | 163 | 213 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-16 | 163 | 211 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-21 | 167 | 211 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.71E-13 | 167 | 209 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 411 aa Download sequence Send to blast |
MPFDSCAQPN GPYELHPVDH PFEGNIGEYA AAGSVAVSFA TFNDLGHQYY SERESKSPVV 60 SQVGSYLPLL TPKTEASHLV GCGLGSYEMN GRFVTRSRKA SSNSLKKANV VKGQWTPEED 120 RKLVKLVEQF GLRKWSCIAQ ILPGRVGKQC RERWHNHLRP NIKKDIWSDE EDMVLIQAHK 180 EVGNKWAEIA KRLPGRTENS IKNHWNATKR RQFARRRSRS SKGPKSGTLL QSYIKSLGIG 240 PTSRKNVLAA APLAAQLAPA LPPPSPAFPV PKQAKRDSEH SPLNENNCGE VSLSFEELLA 300 PICDEFSVDM CDGLFDANDE VFQVCGIDDD FVAMNCIFNH LDYACNSGDH GMDMEMAWDD 360 VDALADCVGL EMESGSSSAA RVETAAQVKK EIDLVEMMAA TTKKSAGAED K |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-46 | 110 | 212 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-46 | 110 | 212 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796038.1 | 1e-158 | transcription factor MYB41-like | ||||
TrEMBL | A0A1E5V2V3 | 1e-168 | A0A1E5V2V3_9POAL; Transcription factor MYB98 | ||||
STRING | Pavir.J02497.1.p | 1e-161 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2806 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18770.1 | 1e-61 | myb domain protein 98 |