PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00008.1.g03620.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 1123aa MW: 120026 Da PI: 8.4296 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.7 | 2.1e-07 | 818 | 863 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e ++ C+ + lC+ C +H+ Ht+vp+ Zjn_sc00008.1.g03620.1.am.mk 818 VWVCEVCELAPAAVTCKADAAVLCAACDADIHEAnplarrHTRVPI 863 689*****************************77899999**9997 PP | |||||||
2 | CCT | 68.5 | 1.7e-23 | 1045 | 1088 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ Zjn_sc00008.1.g03620.1.am.mk 1045 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 1088 9*****************************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF81383 | 1.96E-5 | 14 | 57 | IPR001810 | F-box domain |
SuperFamily | SSF117281 | 5.36E-19 | 96 | 245 | No hit | No description |
Gene3D | G3DSA:2.130.10.80 | 1.8E-15 | 100 | 212 | IPR015916 | Galactose oxidase, beta-propeller |
SMART | SM00612 | 1.7E-4 | 135 | 183 | IPR006652 | Kelch repeat type 1 |
SMART | SM00336 | 0.033 | 775 | 820 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00301 | 780 | 820 | No hit | No description |
PROSITE profile | PS50119 | 10.466 | 816 | 863 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.1E-5 | 817 | 863 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.37E-8 | 819 | 863 | No hit | No description |
SMART | SM00336 | 3.3E-9 | 821 | 863 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 2.7E-17 | 1045 | 1087 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.896 | 1045 | 1087 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1123 aa Download sequence Send to blast |
MSKQQVLDAG EAAGEEAAEM IPGLPEEVAE KCLLHLPFLY HRLFRTVSSS WNRFLTDAPA 60 KPVLIPAGAG AGAVAAASLS FSLPFLFAFA FDPLSRRLQC QALDPFSRRW LLLPPVPGGA 120 AAGSFAVVGL PRRGEIYVIG GVEEGGDKEV RSVAVYSAAR NGWEQATPMR TPRGYMAAGE 180 VGGRVVVAGE DGEAEVFDPE QGRWAPAATR RGAAWRLKRY DDARDEWRTV AGGGVPPEVR 240 RPHVVAGEVA ELAGGRRRIY VIGAGLDVAV GTVAAVVGGG DEEVVEWEVV KGPAEFAGLA 300 PCNAQDQESV PCHLAGEALG TRTCGVKRDA RTSGVSSSSR ATPNDERVNK ACARSRPAVA 360 GARKRVVAGS VVRVWVVPLR LPVIHLRALL SDAGGSSITD ARFSHWRFIL ACKLQRGRPS 420 PTTIDSYAMQ IAHVASCNLQ VDADHSFAPV AEIISPVYFR LKGIRTYARC RPARSSPSTA 480 LQLHRISAGP PPVEPRHSFP RPLATDPSDR DFTGKLRHHR TPMHHPFAPA FASLPSLRFG 540 ERNAPWVRGT LGKGCCDGDG SGIQRVEKQS SDQFLRVRIP SHRCEMRTRD GDVQPRAAFL 600 AGSNPGQQDQ KVGPREMLPA KPIVFSVESV SALLPPLTRS GEVSASDRKL YEMTTSGSSP 660 GTGLKMTLLP PVCVAGRRVH VRRRVKIPEP DCDSTRPSRP LTPGSHTTQI SSSVSSAGLT 720 SATCTNRFAT TCALPATSPS PTNPYISYRA SVPSAPPPPR APLPERTEPS FQVASPGRCC 780 GACETAPAAV HCRTCGGVFL CTACDARPAH AGAGHERVWV CEVCELAPAA VTCKADAAVL 840 CAACDADIHE ANPLARRHTR VPIAPIGSAV AAAAVESVLF GTGEAAEEQK ATEHHQHQHS 900 LNLNVEAKDM KLDYLFSDLD PYLNVELPRF QHADSVVPNG VAVELDFTGG VGVKPSSYSP 960 YAATSLAHSG SSSEVGVVPD ALCVGGGHGS FELDFTRPKT QAYMPYTATP PSHSVTVSSV 1020 DAAEVVPDQR GEAAAVPRPV TGEGREARLM RYREKRKNRR FEKTIRYASR KAYAETRPRI 1080 KGRFAKRTDN DGDADDAEPE AEVAVPTASS YMFDFGYSVV PTF |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3844 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57660.1 | 4e-41 | CONSTANS-like 5 |