PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g03620.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 1123aa    MW: 120026 Da    PI: 8.4296
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g03620.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72.1e-07818863342
                      zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                                    ++C+ +e  ++   C+ +   lC+ C   +H+       Ht+vp+
  Zjn_sc00008.1.g03620.1.am.mk 818 VWVCEVCELAPAAVTCKADAAVLCAACDADIHEAnplarrHTRVPI 863
                                   689*****************************77899999**9997 PP

2CCT68.51.7e-2310451088144
                           CCT    1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44  
                                    Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  Zjn_sc00008.1.g03620.1.am.mk 1045 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 1088
                                    9*****************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813831.96E-51457IPR001810F-box domain
SuperFamilySSF1172815.36E-1996245No hitNo description
Gene3DG3DSA:2.130.10.801.8E-15100212IPR015916Galactose oxidase, beta-propeller
SMARTSM006121.7E-4135183IPR006652Kelch repeat type 1
SMARTSM003360.033775820IPR000315B-box-type zinc finger
CDDcd000210.00301780820No hitNo description
PROSITE profilePS5011910.466816863IPR000315B-box-type zinc finger
PfamPF006432.1E-5817863IPR000315B-box-type zinc finger
CDDcd000216.37E-8819863No hitNo description
SMARTSM003363.3E-9821863IPR000315B-box-type zinc finger
PfamPF062032.7E-1710451087IPR010402CCT domain
PROSITE profilePS5101716.89610451087IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1123 aa     Download sequence    Send to blast
MSKQQVLDAG EAAGEEAAEM IPGLPEEVAE KCLLHLPFLY HRLFRTVSSS WNRFLTDAPA  60
KPVLIPAGAG AGAVAAASLS FSLPFLFAFA FDPLSRRLQC QALDPFSRRW LLLPPVPGGA  120
AAGSFAVVGL PRRGEIYVIG GVEEGGDKEV RSVAVYSAAR NGWEQATPMR TPRGYMAAGE  180
VGGRVVVAGE DGEAEVFDPE QGRWAPAATR RGAAWRLKRY DDARDEWRTV AGGGVPPEVR  240
RPHVVAGEVA ELAGGRRRIY VIGAGLDVAV GTVAAVVGGG DEEVVEWEVV KGPAEFAGLA  300
PCNAQDQESV PCHLAGEALG TRTCGVKRDA RTSGVSSSSR ATPNDERVNK ACARSRPAVA  360
GARKRVVAGS VVRVWVVPLR LPVIHLRALL SDAGGSSITD ARFSHWRFIL ACKLQRGRPS  420
PTTIDSYAMQ IAHVASCNLQ VDADHSFAPV AEIISPVYFR LKGIRTYARC RPARSSPSTA  480
LQLHRISAGP PPVEPRHSFP RPLATDPSDR DFTGKLRHHR TPMHHPFAPA FASLPSLRFG  540
ERNAPWVRGT LGKGCCDGDG SGIQRVEKQS SDQFLRVRIP SHRCEMRTRD GDVQPRAAFL  600
AGSNPGQQDQ KVGPREMLPA KPIVFSVESV SALLPPLTRS GEVSASDRKL YEMTTSGSSP  660
GTGLKMTLLP PVCVAGRRVH VRRRVKIPEP DCDSTRPSRP LTPGSHTTQI SSSVSSAGLT  720
SATCTNRFAT TCALPATSPS PTNPYISYRA SVPSAPPPPR APLPERTEPS FQVASPGRCC  780
GACETAPAAV HCRTCGGVFL CTACDARPAH AGAGHERVWV CEVCELAPAA VTCKADAAVL  840
CAACDADIHE ANPLARRHTR VPIAPIGSAV AAAAVESVLF GTGEAAEEQK ATEHHQHQHS  900
LNLNVEAKDM KLDYLFSDLD PYLNVELPRF QHADSVVPNG VAVELDFTGG VGVKPSSYSP  960
YAATSLAHSG SSSEVGVVPD ALCVGGGHGS FELDFTRPKT QAYMPYTATP PSHSVTVSSV  1020
DAAEVVPDQR GEAAAVPRPV TGEGREARLM RYREKRKNRR FEKTIRYASR KAYAETRPRI  1080
KGRFAKRTDN DGDADDAEPE AEVAVPTASS YMFDFGYSVV PTF
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38442348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.14e-41CONSTANS-like 5