PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g01490.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 326aa    MW: 35161.6 Da    PI: 4.4229
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g01490.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.51.2e-15262297134
                            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                                     C++Cg +   Tp++Rrgpdg++tLCnaCGl+++ k+
  Zjn_sc00008.1.g01490.1.sm.mkhc 262 CHHCGISAsaTPMMRRGPDGPRTLCNACGLMWANKN 297
                                     *****88888**********************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.142127162IPR010399Tify domain
SMARTSM009799.4E-13127162IPR010399Tify domain
PfamPF062004.3E-13130161IPR010399Tify domain
PROSITE profilePS5101713.334187229IPR010402CCT domain
PfamPF062032.8E-16187229IPR010402CCT domain
SMARTSM004011.1E-9256308IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-10260297No hitNo description
CDDcd002021.09E-10261297No hitNo description
Gene3DG3DSA:3.30.50.101.1E-13261297IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.5E-13262297IPR000679Zinc finger, GATA-type
PROSITE patternPS003440262289IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSHHDGSKPY QPRRGPERPA QPAEDATLAV DQLAAAAAQA ESMNNYMEQQ QQQHEQEVGE  60
EEEEEEEEED EEMEDDEEED EGAEGDGQEG GVTGQQAPMD SEAAAAAAAA SGMQMDPHGA  120
MVPTTVPPVS SNQLTLSFQG EVYVFDSVSP DKVQAVLLLL GGRELNPGLG GASSSTPYSK  180
RLNFPHRVAS LMRFREKRKE RNFDKKIRYT VRKEVALRMQ RNKGQFTSSK PKPDEAAAEL  240
TTADGTPNWG ALEGRPPSAA ECHHCGISAS ATPMMRRGPD GPRTLCNACG LMWANKNGNA  300
TQIISAISAE QENPAAAMAN GHELST
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753285.11e-142GATA transcription factor 20
SwissprotQ5Z4U51e-131GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A0A9EJS61e-146A0A0A9EJS6_ARUDO; Uncharacterized protein
STRINGBRADI1G33980.11e-137(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.26e-71ZIM-LIKE 2