PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00008.1.g00900.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SRS
Protein Properties Length: 337aa    MW: 33402.8 Da    PI: 8.2405
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00008.1.g00900.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702215.81e-661112694154
                        DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrel 78 
                                    ++sCqdCGn+akkdCah+RCRtCC+srgf+C thvkstWvpaakrrerqqqlaa+ ++aa+++      a+a skr+rel
  Zjn_sc00008.1.g00900.1.am.mk 111 AGTSCQDCGNNAKKDCAHMRCRTCCRSRGFSCPTHVKSTWVPAAKRRERQQQLAALFHSAANNSasaavaAAAVSKRPREL 191
                                   4579****************************************************9999888878888888899999998 PP

                        DUF702  79 ..kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                     +  +  ++ss+ +++++s+   +  s+P+e+s+eavfrcvr++ vd+ ++elaYqtavsigGh+fkGiL+d+G+++
  Zjn_sc00008.1.g00900.1.am.mk 192 vrSLGRLPSASSAMVATTTSSGDGSGGSFPPELSVEAVFRCVRIGPVDEPDAELAYQTAVSIGGHTFKGILRDHGPAD 269
                                   5533344444555555555555666788***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.4E-63112268IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.2E-25114156IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.4E-18220267IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAGFSLRGGG GGGGGRGGDR GGDHSIGADN LFLYARGAAA AAADTAGGGG GGIGFQLWHP  60
HQQAAAAAAP HTSQFFSSGG VATGVVLGFS SHDGGGGIGG AGGGGTGGGR AGTSCQDCGN  120
NAKKDCAHMR CRTCCRSRGF SCPTHVKSTW VPAAKRRERQ QQLAALFHSA ANNSASAAVA  180
AAAVSKRPRE LVRSLGRLPS ASSAMVATTT SSGDGSGGSF PPELSVEAVF RCVRIGPVDE  240
PDAELAYQTA VSIGGHTFKG ILRDHGPADD AAVGQLPPSS AEYHQLTGAG REESSPAGSS  300
EAAATAVTSA AVLMDPYPTP IGAFAAGTQF FPHNPRT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1615RGGGGGGGGR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043291e-111AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12.
GenBankAP0054631e-111AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01.
GenBankAP0149621e-111AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645076.11e-153protein SHI RELATED SEQUENCE 1
RefseqXP_008645077.11e-153protein SHI RELATED SEQUENCE 1
RefseqXP_008645078.11e-153protein SHI RELATED SEQUENCE 1
TrEMBLA0A2T7DU751e-157A0A2T7DU75_9POAL; Uncharacterized protein
STRINGPavir.J38504.1.p1e-157(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-51Lateral root primordium (LRP) protein-related