PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00008.1.g00880.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 315aa MW: 34535.2 Da PI: 10.2595 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.8 | 1.4e-28 | 132 | 182 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvt+skRr+gi+KKA EL vLCda+va+i+fsstgk +e++s Zjn_sc00008.1.g00880.1.am.mk 132 KRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCS 182 79***********************************************96 PP | |||||||
2 | K-box | 48.5 | 3.7e-17 | 186 | 240 | 14 | 68 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRsk 68 ++++q+ l+ Lk+ ++nL++e+R+++GedL+ L++ eL+ Leq+++ +lk+++ Zjn_sc00008.1.g00880.1.am.mk 186 ESNMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDVALKEVKHS 240 579*************************************************864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.59 | 124 | 184 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.6E-42 | 124 | 183 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.59E-31 | 125 | 195 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.64E-40 | 125 | 191 | No hit | No description |
PRINTS | PR00404 | 5.1E-28 | 126 | 146 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-24 | 133 | 180 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-28 | 146 | 161 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-28 | 161 | 182 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-11 | 186 | 239 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 8.685 | 186 | 279 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MELRYVLAGS PTNGTSLLLA TTAPPILSRA RHEASQARQH GATGRHGQAR RPTLSPIRQL 60 SVTVARPGLV LATPKSLSQL KSSSGSLART RSSHQLLALL DLKKSVGPEK QLARSTTEDL 120 DKKMGRGKIE IKRIENATNR QVTYSKRRTG IMKKARELTV LCDAQVAIIM FSSTGKYHEF 180 CSPGTESNMQ RTLSHLKDIN RNLRTEIRQR MGEDLDGLEF DELRGLEQNV DVALKEVKHS 240 YEAYRNLQQE LGMREEPAYG YVDNTGAGWD GAVAQLGGGG SAATATATDM YAFRVVPTQP 300 NLHGVAYGSH DLRLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-16 | 124 | 219 | 1 | 92 | MEF2C |
5f28_B | 8e-16 | 124 | 219 | 1 | 92 | MEF2C |
5f28_C | 8e-16 | 124 | 219 | 1 | 92 | MEF2C |
5f28_D | 8e-16 | 124 | 219 | 1 | 92 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS4. {ECO:0000269|PubMed:12506001, ECO:0000269|PubMed:12905025, ECO:0000269|PubMed:14558657}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT018998 | 1e-76 | BT018998.1 Zea mays clone Contig486.F mRNA sequence. | |||
GenBank | BT039988 | 1e-76 | BT039988.1 Zea mays full-length cDNA clone ZM_BFc0056L03 mRNA, complete cds. | |||
GenBank | EU965657 | 1e-76 | EU965657.1 Zea mays clone 287776 MADS-box transcription factor 16 mRNA, complete cds. | |||
GenBank | EU966237 | 1e-76 | EU966237.1 Zea mays clone 292756 MADS-box transcription factor 16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812646.1 | 1e-114 | MADS-box transcription factor 16 | ||||
Swissprot | Q944S9 | 1e-99 | MAD16_ORYSJ; MADS-box transcription factor 16 | ||||
TrEMBL | A0A2S3HGN1 | 1e-113 | A0A2S3HGN1_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DU70 | 1e-113 | A0A2T7DU70_9POAL; Uncharacterized protein | ||||
STRING | Si007221m | 1e-113 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5728 | 35 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 5e-43 | MIKC_MADS family protein |