PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00008.1.g00360.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 289aa MW: 32850.3 Da PI: 7.9849 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 148.2 | 4.3e-46 | 14 | 142 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya..tgkrknratksg 81 pGfrFhPt+eel+++yLk+ v+gkkl++ ++i++v +y++ePw+Lp ++ +e+ewyfF++rd+k++ g r++r+t++g Zjn_sc00008.1.g00360.1.am.mk 14 PGFRFHPTEEELLQFYLKQVVHGKKLKF-DIIPTVLLYRHEPWELPGLARVGEREWYFFVPRDRKQQpgGGGRPSRTTERG 93 9**************************9.99***************8778899************9954578********* PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +Wkatg+d++v ++ ++l+glkktLv+y+grap+g+ktdWvm+eyrl Zjn_sc00008.1.g00360.1.am.mk 94 FWKATGSDRAVRCAddPKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 142 ************98666778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.995 | 12 | 171 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.98E-53 | 13 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-24 | 14 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MKRRGEGAAE LELPGFRFHP TEEELLQFYL KQVVHGKKLK FDIIPTVLLY RHEPWELPGL 60 ARVGEREWYF FVPRDRKQQP GGGGRPSRTT ERGFWKATGS DRAVRCADDP KRLIGLKKTL 120 VYYEGRAPRG TKTDWVMNEY RLPDSVAAGQ LGDHSSPPPK EDMVLCKIYR KAVSLKELEQ 180 RVAMEELARA TATPSDSNND DTGSHADSIS SSEPHPHNQA VTSTEMKKEE EACCAVVRPA 240 TLSLPQLEVA RPLQQQLGAE WMMQNPLLTQ LRSPWMETWS PYYASVLNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-44 | 1 | 171 | 3 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003685 | 1e-112 | AP003685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0548E04. | |||
GenBank | AP004685 | 1e-112 | AP004685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0017G10. | |||
GenBank | AP014962 | 1e-112 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 1e-112 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. | |||
GenBank | CU406703 | 1e-112 | CU406703.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C111K18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966508.1 | 1e-146 | NAC domain-containing protein 67 | ||||
Swissprot | Q10S65 | 3e-97 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | K3XYI6 | 1e-145 | K3XYI6_SETIT; Uncharacterized protein | ||||
STRING | Si006994m | 1e-145 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1770 | 38 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 4e-83 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
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