PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00007.1.g12210.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 425aa MW: 47331.2 Da PI: 9.1643 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.1 | 5.4e-20 | 168 | 215 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+ll+++v+q+G g+W+++a+ g+gR++k+c++rw +yl Zjn_sc00007.1.g12210.1.am.mk 168 KGPWTAQEDKLLLEYVRQHGEGRWNSVAKLTGLGRSGKSCRLRWVNYL 215 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.1e-16 | 221 | 265 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ ++++++++G++ W+tIar ++ gRt++++k++w+++ Zjn_sc00007.1.g12210.1.am.mk 221 RGKITPQEESVILELHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 265 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.314 | 163 | 215 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.16E-30 | 166 | 262 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-17 | 167 | 217 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-19 | 168 | 215 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-25 | 169 | 222 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.97E-13 | 170 | 215 | No hit | No description |
PROSITE profile | PS51294 | 24.933 | 216 | 270 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-15 | 220 | 268 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 221 | 265 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 223 | 268 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.85E-10 | 225 | 266 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MWRAPSGRGD GDTAMWTPKG SIQIKRWVHA PETGRPPGGF SPMATAAAIR MYRSSEQRLS 60 AANRVARDLD ERSGGQVFRE LDGYPGRLLA VAETWFIPVV ATTGNTKIAG AKLHPQVEAT 120 LSAENPTLSR GRQRGSRRLI SSIVDRQKKR LEMEGQFGWG REEGGWRKGP WTAQEDKLLL 180 EYVRQHGEGR WNSVAKLTGL GRSGKSCRLR WVNYLRPDLK RGKITPQEES VILELHALWG 240 NRWSTIARSL PGRTDNEIKN YWRTHFKKGK PSKNIERARA RFLKQRCEMQ SQLLLQGQEP 300 PPPPQQQQQL EETDHDDAAT GKAAPVACLA QQNEALKMML DMDDLPYQLC PMSSCSSSYH 360 LHGGSGSGSA SAASEGSSED QLQTGYTWGW GSLWNLEGVV DDIDGGACGW DSSFTWLQDQ 420 GLAFD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 168 | 268 | 7 | 106 | B-MYB |
1h8a_C | 3e-25 | 168 | 268 | 27 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 149 | DRQKKR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK099283 | 1e-140 | AK099283.1 Oryza sativa Japonica Group cDNA clone:J023132O17, full insert sequence. | |||
GenBank | AK111807 | 1e-140 | AK111807.1 Oryza sativa Japonica Group cDNA clone:J013104N22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454181.1 | 1e-126 | transcription factor MYB51 | ||||
TrEMBL | C5XXQ5 | 1e-124 | C5XXQ5_SORBI; Uncharacterized protein | ||||
STRING | Sb04g026210.1 | 1e-125 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 2e-63 | myb domain protein 79 |