PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00007.1.g12040.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 425aa MW: 47136.8 Da PI: 7.7586

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00007.1.g12040.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.7	1.4e-50	163	291	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrF P+deelv++yL kkv+++++ ++ evd++ ePw+Lp +k + +ewyfFs rd+kyatg+r+nratk+g Zjn_sc00007.1.g12040.1.am.mk 163 LPPGFRFYPSDEELVCHYLYKKVANERIAQ-GTLVEVDLHAREPWELPDVAKLTASEWYFFSFRDRKYATGSRTNRATKTG 242 79***********************998.88***********77777889********************* PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkd+ev s ++++vg++ktLvfy+grap+g+k+ Wvmhe+rl Zjn_sc00007.1.g12040.1.am.mk 243 YWKATGKDREVRSPasTRAVVGMRKTLVFYQGRAPNGVKSGWVMHEFRL 291 ********99777788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-60	155	310	IPR003441	NAC domain
PROSITE profile	PS51005	58.558	163	310	IPR003441	NAC domain
Pfam	PF02365	1.3E-27	164	291	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MQTHVKRPHI NGQTVDFLSR SVACGAGTLH IISASRYSTH TRASGKLALD HVWSRSIDAA 60 WLGNLPGRVW LCEADDACCR CRCSCTTLAR FQYSARPAVR ATEMAARYWN LSTWLRSVSV 120 VASADGDLTA ARHVSSRPAD QLDKVATPRR QDEVLHSMIE STLPPGFRFY PSDEELVCHY 180 LYKKVANERI AQGTLVEVDL HAREPWELPD VAKLTASEWY FFSFRDRKYA TGSRTNRATK 240 TGYWKATGKD REVRSPASTR AVVGMRKTLV FYQGRAPNGV KSGWVMHEFR LDAPHSQPRE 300 DWVLCRVFQK TKGDGDGQVD SACGASSPTL TGSSHAMPEQ EHHHAAPCGY YGPGFLPQQE 360 VAVLPYYDGP AVDRHGFPQD DAGGALPGLE FGARGVAGDE YGFGWFDMAG FDEMTTNHGF 420 PQGWN

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MQTHVKRPHI NGQTVDFLSR SVACGAGTLH IISASRYSTH TRASGKLALD HVWSRSIDAA  60
WLGNLPGRVW LCEADDACCR CRCSCTTLAR FQYSARPAVR ATEMAARYWN LSTWLRSVSV  120
VASADGDLTA ARHVSSRPAD QLDKVATPRR QDEVLHSMIE STLPPGFRFY PSDEELVCHY  180
LYKKVANERI AQGTLVEVDL HAREPWELPD VAKLTASEWY FFSFRDRKYA TGSRTNRATK  240
TGYWKATGKD REVRSPASTR AVVGMRKTLV FYQGRAPNGV KSGWVMHEFR LDAPHSQPRE  300
DWVLCRVFQK TKGDGDGQVD SACGASSPTL TGSSHAMPEQ EHHHAAPCGY YGPGFLPQQE  360
VAVLPYYDGP AVDRHGFPQD DAGGALPGLE FGARGVAGDE YGFGWFDMAG FDEMTTNHGF  420
PQGWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-47	158	310	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-47	158	310	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-47	158	310	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-47	158	310	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-47	158	310	15	168	NAC domain-containing protein 19
3swm_B	2e-47	158	310	15	168	NAC domain-containing protein 19
3swm_C	2e-47	158	310	15	168	NAC domain-containing protein 19
3swm_D	2e-47	158	310	15	168	NAC domain-containing protein 19
3swp_A	2e-47	158	310	15	168	NAC domain-containing protein 19
3swp_B	2e-47	158	310	15	168	NAC domain-containing protein 19
3swp_C	2e-47	158	310	15	168	NAC domain-containing protein 19
3swp_D	2e-47	158	310	15	168	NAC domain-containing protein 19
4dul_A	1e-47	158	310	12	165	NAC domain-containing protein 19
4dul_B	1e-47	158	310	12	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK062955	1e-171	AK062955.1 Oryza sativa Japonica Group cDNA clone:001-109-C12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002452475.1	1e-120	NAC domain-containing protein 100
TrEMBL	C5XXS9	1e-119	C5XXS9_SORBI; Uncharacterized protein
STRING	Sb04g026440.1	1e-119	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP697	38	166

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	1e-72	NAC domain containing protein 74