PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00007.1.g11420.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 218aa MW: 22698.5 Da PI: 10.3856 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.3 | 1.4e-34 | 54 | 217 | 8 | 126 |
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasns 85 ++ h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ +++ssssa+ + Zjn_sc00007.1.g11420.1.sm.mk 54 GKDQHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssAPSTSSSSAHYQ 134 4899******************************************************88888444222233333333322 PP TCP 86 ssg..........................................kaaksaakskksqksaasalnlakesrakararare 124 +++ + +++a++ + +a++lnl + +a a ra+e Zjn_sc00007.1.g11420.1.sm.mk 135 QQQtvlgkrpreesdatvsvaaaasafwaalptsaprsteaswgfSPLEAQATTTYVPMAQAHHLNLIAALSAGAARRAEE 215 222345555666666667777776667777776666666666666444444433333444444566666666777777666 PP TCP 125 rt 126 +t Zjn_sc00007.1.g11420.1.sm.mk 216 ET 217 66 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.8E-30 | 53 | 141 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.747 | 54 | 108 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MATRDVSTAA AAAAMFHVYQ PLQVPSTAVT AAATDGALVV PATTPGKKKA SQGGKDQHSK 60 VNGRGRRVRM PIVCAARVFQ LTRELGLKSD GQTIEWLLRQ AEPSILAATG SGTTPAVFVS 120 SSAPSTSSSS AHYQQQQTVL GKRPREESDA TVSVAAAASA FWAALPTSAP RSTEASWGFS 180 PLEAQATTTY VPMAQAHHLN LIAALSAGAA RRAEEETR |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00655 | PBM | Transfer from LOC_Os02g42380 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727699 | 1e-103 | KJ727699.1 Zea mays clone pUT5638 TCP transcription factor (TCP16) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953208.1 | 1e-85 | transcription factor TCP21-like | ||||
Swissprot | Q9FMX2 | 3e-37 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A368PNU6 | 3e-84 | A0A368PNU6_SETIT; Uncharacterized protein | ||||
STRING | Sb04g026970.1 | 2e-84 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G08330.1 | 5e-33 | TCP family protein |