PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00007.1.g11010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 39377.1 Da PI: 6.6284 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.5 | 4.2e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPtdeelv++yL+kkv+++k++l ++ik+vd+yk+ePwdL++ k+ e++ewyfFs++dkky+tg+r+nrat Zjn_sc00007.1.g11010.1.am.mk 7 VPPGFRFHPTDEELVDYYLRKKVASNKIDL-DIIKDVDLYKIEPWDLQEkcKIGMeEQNEWYFFSHKDKKYPTGTRTNRAT 86 69****************************.99**************952433333556********************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++g+Wkatg+dk++++ k+ lvg++ktLvfy+grap+g+k+dW+mheyrle Zjn_sc00007.1.g11010.1.am.mk 87 TAGFWKATGRDKPIYT-KNCLVGMRKTLVFYRGRAPNGQKSDWIMHEYRLE 136 ****************.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-62 | 5 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.945 | 7 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-28 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MDGSSHVPPG FRFHPTDEEL VDYYLRKKVA SNKIDLDIIK DVDLYKIEPW DLQEKCKIGM 60 EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YTKNCLVGMR KTLVFYRGRA 120 PNGQKSDWIM HEYRLETTEN ATAPMVQEEG WVVCRVFKKR VATVQRMADS SPCWFDDHVA 180 GFMPEFGSSR QLLHHHHPNA AYVRQQQQLY HCKPELEYHH LLPSQEVFLP QLPQLESPKP 240 PPYIGHGSGS SLQSFDDPSR YNAQQQTMET AAYMSAVDDS AADWRALDKF VASQMFSHGD 300 GTSKEPSYYN PVPAFQLADS TKREETLEYA STSASGGEAD LWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-51 | 6 | 160 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT075093 | 0.0 | KT075093.1 Panicum virgatum secondary wall NAC master switch (SWN8B) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825485.1 | 0.0 | NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-118 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A0K1TPH7 | 0.0 | A0A0K1TPH7_PANVG; Secondary wall NAC master switch | ||||
STRING | Pavir.J39804.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2370 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 6e-99 | NAC 007 |
Publications ? help Back to Top | |||
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