PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g10130.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 808aa    MW: 86792.1 Da    PI: 9.7872
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g10130.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-05526223
                                  EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                  +C+ C+++F ++  L  H+r+H
  Zjn_sc00007.1.g10130.1.am.mk  5 TCKLCSRRFASPRALAGHMRSH 26
                                  6********************9 PP
2zf-C2H211.80.00077263285123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++Cp+C ++Fs+   L  H r+H
  Zjn_sc00007.1.g10130.1.am.mk 263 HECPYCYRVFSSGQALGGHKRSH 285
                                   79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.681427IPR007087Zinc finger, C2H2
SMARTSM003550.0078426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139123.6E-4626IPR007087Zinc finger, C2H2
PfamPF139123.4E-9202226IPR007087Zinc finger, C2H2
SMARTSM0035555202222IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.52E-6202224No hitNo description
SuperFamilySSF576672.52E-6258285No hitNo description
PROSITE profilePS501579.39263285IPR007087Zinc finger, C2H2
PfamPF139124.4E-12263285IPR007087Zinc finger, C2H2
SMARTSM003550.2263285IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280265285IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MAKNTCKLCS RRFASPRALA GHMRSHSLAA SAAAAAAAAA AAAAEAAAAK QQISSASSAS  60
TSFTTVDDED VGFKKPASIH ALRENPKRSL RAADGSSSSS DRESEAESTQ PPAKRASPPA  120
AWGEADPVSS LSEAATPEED VALSLMKLSR DSWPSASRVE EADYAKDDDS DDDGYVAPPA  180
PTPLRRLAAP APAPVAEKRT QFQCTACKKV FRSYQALGGH RASNVRGGRG GCCAPPVAPP  240
PPPPQPQTPS PLPEQQHGDE APHECPYCYR VFSSGQALGG HKRSHVCGAA AAAAAQQAAP  300
PSPIKNPGMI DLNVEPPSEE VELSAVSDPH FNPAASSGTC MRRSFYCCHG QWLVSRSCLL  360
ACLALGQLGR DRQCVSWGSL CGAPPEADRA GETVGTRVRA WRVLMTVAKG RLPRRGRQIL  420
IGRTDCDGDT QLGILAASLS AVRSSSSSTF VTIRSRRYCE KKIVVDAVQR PANPRFRRAR  480
CSRQAAARRC PVPADDGGAD RTAGRQAGNF SALGLGVASK AAGELVQSVT QVAWHAPCVR  540
AWRLTDPIRR PTHRFVVARS LAPKLDHHMV GGEQAKPTYS YYARTLAFKP AVTRGEERRG  600
CKPESGEEKY PRSNESMLMA TMGTRDACSE KKSVGLGLAG WGLGLEKKLT RRPPPAEQDT  660
ESWSSVKLEQ RQTDRCGRRI KQDTESQEAT LLVKASEGEV KRRTGLGRNR SVSLNCAQVL  720
PYLHRSLAIH PFIGYVVQLY TATLPFNVWY ATRQRMWSAA CLHDAAAVFS CGYRASHARL  780
RVPPVPLEQK HKSDWIFSSS RSIVKGTG
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-23C2H2-like zinc finger protein