PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00007.1.g10010.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 701aa MW: 72889.4 Da PI: 6.3382

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00007.1.g10010.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	262.6	1.4e-80	342	700	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 + L ++A+a ++g+ + a+++Larl+++ p g+p+ R a+y++eAL a + + ++ t++ +++ +laa+k Zjn_sc00007.1.g10010.1.am.mk 342 DELAAAAKATEAGNSTGAREILARLNHQLPPFGKPFLRSASYLKEALLALAEGR----HHHGGSRLTTPLDVALKLAAYKS 418 7899******************************************999993....33345566666779***** PP GRAS 84 fsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeel 158 fs++sP+l+f+++ta qa+l++++++ +++H+iDfd++ G+QW+++lq+La R+ + p +++ +++s++s++ el Zjn_sc00007.1.g10010.1.am.mk 419 FSDLSPVLQFTNFTATQALLDEIASSsaSCIHVIDFDLGVGGQWASFLQELAHRRcaggATMPFVKLSAFVSAASHHPLEL 499 ******************99987899*******************9998666689************** PP GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238 + ++++++fA lg+pfefn++ +++++++ eL + +E++aV+l + + +++L+lvk+l Pkv Zjn_sc00007.1.g10010.1.am.mk 500 RLAKDNISQFAGDLGIPFEFNAI---SVDAFNPAELISPTgDEVIAVSLPVGCSARA---PP----LPAILRLVKQLGPKV 570 ******************9...899999666689******9777665...44....556******** PP GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319 vv +++ d+ + +F ++ l++++ ++ l+dsl+a+ + +++ ++k+E++l++++i++ v + ++ + + Wr+++ Zjn_sc00007.1.g10010.1.am.mk 571 VVAIDHGGDRADLPFSQHYLNCFQSCVFLLDSLDAS-GIDADSASKIEKFLIQPRIEDTVIGRCKS-----DKPMAWRSAF 645 *****************************999.8999***************988887.....78999* PP GRAS 320 eeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +aGF pv+ s a++qa++ll++v+++g++ve+ l+l+W++ +Lv+vSaWr Zjn_sc00007.1.g10010.1.am.mk 646 AAAGFAPVSPSILAEAQADCLLKRVQVRGFHVEKCGVGLTLYWQRGELVTVSAWR 700 ****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.631	314	680	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.7E-78	342	700	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MRAALFGAER NGAADLVGGG KALVEPRSVL DCTRSPSPNN STSTLSSSLG GGAADSAGGV 60 AAVSDNSAAA AKRGAPGEHG GGGGGGKEDW AGGCDLPPIP SGLDMGLVGG DGWDAVLGSA 120 AAAGQDQTFL NWIIGAAGDL DQPGPTLQVH NQPLLDNAGF GFPATDPLGF SLEPHLGGVA 180 SDLSSPGAVS HTSNSGGGSK ASSSFGLFSP ESASLQPTPP PMLFHEGIDT KPPLLAAQPP 240 GLLHQYQHHP PPPASTFFMP LPSFTDHNQQ PPLLQPPPKR HPSMADDLYH ARNRLPSAAA 300 AQGLPFPPIH GPAPFQFHPS PTVPHGAMKS TVAEAAQQQL LDELAAAAKA TEAGNSTGAR 360 EILARLNHQL PPFGKPFLRS ASYLKEALLA LAEGRHHHGG SRLTTPLDVA LKLAAYKSFS 420 DLSPVLQFTN FTATQALLDE IASSSASCIH VIDFDLGVGG QWASFLQELA HRRCAGGATM 480 PFVKLSAFVS AASHHPLELR LAKDNISQFA GDLGIPFEFN AISVDAFNPA ELISPTGDEV 540 IAVSLPVGCS ARAPPLPAIL RLVKQLGPKV VVAIDHGGDR ADLPFSQHYL NCFQSCVFLL 600 DSLDASGIDA DSASKIEKFL IQPRIEDTVI GRCKSDKPMA WRSAFAAAGF APVSPSILAE 660 AQADCLLKRV QVRGFHVEKC GVGLTLYWQR GELVTVSAWR C

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MRAALFGAER NGAADLVGGG KALVEPRSVL DCTRSPSPNN STSTLSSSLG GGAADSAGGV  60
AAVSDNSAAA AKRGAPGEHG GGGGGGKEDW AGGCDLPPIP SGLDMGLVGG DGWDAVLGSA  120
AAAGQDQTFL NWIIGAAGDL DQPGPTLQVH NQPLLDNAGF GFPATDPLGF SLEPHLGGVA  180
SDLSSPGAVS HTSNSGGGSK ASSSFGLFSP ESASLQPTPP PMLFHEGIDT KPPLLAAQPP  240
GLLHQYQHHP PPPASTFFMP LPSFTDHNQQ PPLLQPPPKR HPSMADDLYH ARNRLPSAAA  300
AQGLPFPPIH GPAPFQFHPS PTVPHGAMKS TVAEAAQQQL LDELAAAAKA TEAGNSTGAR  360
EILARLNHQL PPFGKPFLRS ASYLKEALLA LAEGRHHHGG SRLTTPLDVA LKLAAYKSFS  420
DLSPVLQFTN FTATQALLDE IASSSASCIH VIDFDLGVGG QWASFLQELA HRRCAGGATM  480
PFVKLSAFVS AASHHPLELR LAKDNISQFA GDLGIPFEFN AISVDAFNPA ELISPTGDEV  540
IAVSLPVGCS ARAPPLPAIL RLVKQLGPKV VVAIDHGGDR ADLPFSQHYL NCFQSCVFLL  600
DSLDASGIDA DSASKIEKFL IQPRIEDTVI GRCKSDKPMA WRSAFAAAGF APVSPSILAE  660
AQADCLLKRV QVRGFHVEKC GVGLTLYWQR GELVTVSAWR C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-20	348	699	27	378	Protein SCARECROW
5b3h_A	1e-20	348	699	26	377	Protein SCARECROW
5b3h_D	1e-20	348	699	26	377	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682654.1	0.0	scarecrow-like protein 27
TrEMBL	A0A368PPT9	0.0	A0A368PPT9_SETIT; Uncharacterized protein
STRING	Si016508m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2020	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	8e-83	GRAS family protein