PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00007.1.g09550.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 166aa MW: 19542.7 Da PI: 9.834 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.5 | 2.7e-06 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Zjn_sc00007.1.g09550.1.sm.mkhc 43 FVCEVCNKGFQREQNLQLHRRGH 65 89*******************88 PP | |||||||
2 | zf-C2H2 | 14.1 | 0.00014 | 120 | 142 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Zjn_sc00007.1.g09550.1.sm.mkhc 120 WKCDKCTKRYAVQSDWKAHSKIC 142 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.81E-8 | 42 | 65 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-6 | 42 | 65 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 7.4E-6 | 43 | 65 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 11.094 | 43 | 65 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0041 | 43 | 65 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 150 | 85 | 115 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.1E-5 | 108 | 141 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.81E-8 | 115 | 140 | No hit | No description |
SMART | SM00355 | 160 | 120 | 140 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MEKKRASLFL LLSWFVTYTY ETPDPDAEVI ALTPKTLMAT NRFVCEVCNK GFQREQNLQL 60 HRRGHNLPWK LKQKDPSQAQ RRRVYTCPEP TCAHHDPARA LGDLTGIKKH FCRKHGEKKW 120 KCDKCTKRYA VQSDWKAHSK ICGTREYRCD CGTLFSRYVL LVLYVY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-21 | 116 | 164 | 3 | 51 | Zinc finger protein JACKDAW |
5b3h_F | 2e-21 | 116 | 164 | 3 | 51 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY754864 | 1e-180 | AY754864.1 Zea mays INDETERMINATE-related protein 10 mRNA, complete cds. | |||
GenBank | BT054258 | 1e-180 | BT054258.1 Zea mays full-length cDNA clone ZM_BFb0200O05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105281.2 | 1e-102 | INDETERMINATE-related protein 10 | ||||
Swissprot | Q8GYC1 | 3e-89 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
Swissprot | Q9ZUL3 | 1e-88 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A3L6EVK8 | 1e-100 | A0A3L6EVK8_MAIZE; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | B7ZY66 | 1e-100 | B7ZY66_MAIZE; Indeterminate domain p10 | ||||
STRING | Sb04g032140.1 | 1e-100 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02080.1 | 1e-91 | indeterminate(ID)-domain 4 |
Publications ? help Back to Top | |||
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