PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00007.1.g09430.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 376aa MW: 38248.5 Da PI: 8.8333

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00007.1.g09430.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.3e-39	78	139	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Zjn_sc00007.1.g09430.1.sm.mkhc 78 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 139 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	76	136	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-33	80	136	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	82	136	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	84	120	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MDAAHWHQGL GLVKPMEEML MAGNPNPNQN QNPAPAAPSA PPGGAQRAGV PAGSAAAPAA 60 GAGTDAGAGT ERRARPQKEK ALNCPRCNST NTKFCYYNNY SLQQPRYFCK TCRRYWTEGG 120 SLRNVPVGGG SRKNKRSSSS VSVAAATTSA AMSGTVPVGV GLAAAKNPKL VHEGAQDLNL 180 AFPHHNGRGL QPPEFAAFPS LESSSVCNPA GAAMAGTGAG GRGVGAFSAM ELLRSTGYYV 240 PLQHMQLGMP AEYTSAGFAL GELRMPPPPQ SQSVLGFSLD THGTGGVGGP GAYSAALQDS 300 AAGRLLFPFE DLKPAVCAAG GGVSNTVGDH QYEHSKDQGG DGRAASGVTG GHQTPGFWNN 360 SMIGNASSNG SGGGPW

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MDAAHWHQGL GLVKPMEEML MAGNPNPNQN QNPAPAAPSA PPGGAQRAGV PAGSAAAPAA  60
GAGTDAGAGT ERRARPQKEK ALNCPRCNST NTKFCYYNNY SLQQPRYFCK TCRRYWTEGG  120
SLRNVPVGGG SRKNKRSSSS VSVAAATTSA AMSGTVPVGV GLAAAKNPKL VHEGAQDLNL  180
AFPHHNGRGL QPPEFAAFPS LESSSVCNPA GAAMAGTGAG GRGVGAFSAM ELLRSTGYYV  240
PLQHMQLGMP AEYTSAGFAL GELRMPPPPQ SQSVLGFSLD THGTGGVGGP GAYSAALQDS  300
AAGRLLFPFE DLKPAVCAAG GGVSNTVGDH QYEHSKDQGG DGRAASGVTG GHQTPGFWNN  360
SMIGNASSNG SGGGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826520.1	1e-162	dof zinc finger protein 2-like isoform X1
Swissprot	B9F1L8	1e-134	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	A0A2T7FAC1	1e-162	A0A2T7FAC1_9POAL; Uncharacterized protein
STRING	Pavir.Aa00902.1.p	1e-154	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	4e-43	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]