PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00007.1.g08830.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 549aa MW: 59222.8 Da PI: 10.2522

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00007.1.g08830.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.3	5.6e-16	165	209	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E+ ++++a +++G W++I +++g ++t+ q++s+ qk+ Zjn_sc00007.1.g08830.1.sm.mkhc 165 REKWTEDEHRRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 209 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.19E-15	159	212	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.732	160	214	IPR017930	Myb domain
TIGRFAMs	TIGR01557	4.3E-16	163	212	IPR006447	Myb domain, plants
SMART	SM00717	1.7E-12	164	212	IPR001005	SANT/Myb domain
Pfam	PF00249	8.3E-14	165	208	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-9	165	205	IPR009057	Homeodomain-like
CDD	cd00167	1.21E-9	167	210	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence Send to blast
MPRKLWPEEE EKDGRKQKNP VRRGTLVRAL FLRPSTPLSV PLPLSSPVQP ASLPLLITLP 60 FLARPHQRGE PARGRDICRS VAGLFGRDIW GRLFRATSAT SRSTGMTCLE RKTMATDENA 120 VGDRAAGENA VDHGNNHPGP GGMDLAGDGD HVPKTRKPYT ITKQREKWTE DEHRRFLEAL 180 QLHGRAWRRI QEHIGTKTAV QIRSHAQKFF TKVVTVVRES SGSNGGSGAG APSIQIPPPR 240 PKRKPAHPYP RKVDGAAKKH APTLKRLEKP PVRRMQSLRE QDDGSPTSVL TAAQTVLRAD 300 ALDGAFSNTW SGGDRSRAPS VVGSDEHGNG GGSSAFCDAK DCAGSEASVF KLFGKKVAVK 360 DSYQHLQNGR NLKIDVSPAC VTKPTGNAIP CAGANSWNHL WPGNMQQVMY FLPGPGSFPA 420 QSVMPWLGYN GSMPCSLFYP QAVTSNQEHH IPSESPDPEG SLTGSNTASS VAPASAAQNS 480 DAVESRAEQG KASESVTKPA VKRLLKCPSS ASTNRRGFMP YKRCAAESDA PRSVAPGEEA 540 DGELTRLCL

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence Send to blast

MPRKLWPEEE EKDGRKQKNP VRRGTLVRAL FLRPSTPLSV PLPLSSPVQP ASLPLLITLP  60
FLARPHQRGE PARGRDICRS VAGLFGRDIW GRLFRATSAT SRSTGMTCLE RKTMATDENA  120
VGDRAAGENA VDHGNNHPGP GGMDLAGDGD HVPKTRKPYT ITKQREKWTE DEHRRFLEAL  180
QLHGRAWRRI QEHIGTKTAV QIRSHAQKFF TKVVTVVRES SGSNGGSGAG APSIQIPPPR  240
PKRKPAHPYP RKVDGAAKKH APTLKRLEKP PVRRMQSLRE QDDGSPTSVL TAAQTVLRAD  300
ALDGAFSNTW SGGDRSRAPS VVGSDEHGNG GGSSAFCDAK DCAGSEASVF KLFGKKVAVK  360
DSYQHLQNGR NLKIDVSPAC VTKPTGNAIP CAGANSWNHL WPGNMQQVMY FLPGPGSFPA  420
QSVMPWLGYN GSMPCSLFYP QAVTSNQEHH IPSESPDPEG SLTGSNTASS VAPASAAQNS  480
DAVESRAEQG KASESVTKPA VKRLLKCPSS ASTNRRGFMP YKRCAAESDA PRSVAPGEEA  540
DGELTRLCL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814514.1	1e-173	protein REVEILLE 1-like
TrEMBL	A0A1E5VGC7	1e-171	A0A1E5VGC7_9POAL; Protein LHY (Fragment)
TrEMBL	A0A2S3GS63	1e-171	A0A2S3GS63_9POAL; Uncharacterized protein
STRING	Si017289m	1e-157	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2722	36	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37260.1	1e-31	MYB_related family protein