PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00007.1.g07800.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRF | ||||||||
Protein Properties | Length: 390aa MW: 41778.6 Da PI: 9.3675 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.1 | 3.6e-24 | 135 | 179 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ + +k+CErH+hrgr+rsrk++e+ Zjn_sc00007.1.g07800.1.sm.mk 135 DPEPGRCRRTDGKKWRCSKEAAPQSKYCERHMHRGRNRSRKPVET 179 79****************************************997 PP | |||||||
2 | QLQ | 55.9 | 1.3e-19 | 74 | 109 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT+aQ ++L++Q+l+yKyLaa++ vPp+L+++i++ Zjn_sc00007.1.g07800.1.sm.mk 74 PFTPAQYEELEQQALIYKYLAAGVAVPPDLVVPIRR 109 8*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.0E-10 | 73 | 109 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.979 | 74 | 109 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.6E-13 | 74 | 108 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.711 | 135 | 179 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.5E-20 | 136 | 178 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MPYASLSPAG GGDHRSSTAT ASLLPFCRSS PLSSAYATTA PFFALPVVAV LGNGGSGGVG 60 EDAQLSGRWT RPLPFTPAQY EELEQQALIY KYLAAGVAVP PDLVVPIRRG LDSLATRFYG 120 HPTLSYGSYF GKKLDPEPGR CRRTDGKKWR CSKEAAPQSK YCERHMHRGR NRSRKPVETQ 180 LLPHSQSPSA MAPIAAQPLA AAASGRNFQS HSLYPAIAGS NGGGRGSNIS SPFSSSMGSS 240 QLNLDNTATY AALGGGTGKA LRYTGYGIRS LADEHNQLIS EALDLSSMEN QWRLPSYPQL 300 LRQSTVNSLS KMDRQPLSFL GNDFGTVGSV KQENQLRPFF DEWPKSRDSW PGLGDENTNL 360 TSFSATQLSI STPMASSDFS AASSQSPNGE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of meristematic function in leaves, stems and inflorescences (PubMed:24532604). Transcription activator that plays a regulatory role in grain development (PubMed:26187814, PubMed:27250747, PubMed:27250749, PubMed:26936408, PubMed:27107174). Positively regulates grain size by promoting cell division and expansion, leading to increased grain length and width (PubMed:26187814, PubMed:27250747, PubMed:27250749, PubMed:26936408, PubMed:27107174). Positively regulates the expression of genes promoting cell proliferation (PubMed:26187814, PubMed:26936408). Activates the expression of expansin genes to promote cell expansion and grain size (PubMed:27250747). May promote grain size by activating brassinosteroid responses (PubMed:27250747). Component of a network formed by the microRNA396 (miRNA396), the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation (Probable). Component of the miRNA396c-GRF4-GIF1 regulatory module that plays an important role in grain size determination (Probable) (PubMed:27250747, PubMed:27250749, PubMed:27107174). {ECO:0000269|PubMed:24532604, ECO:0000269|PubMed:26187814, ECO:0000269|PubMed:26936408, ECO:0000269|PubMed:27107174, ECO:0000269|PubMed:27250747, ECO:0000269|PubMed:27250749, ECO:0000305|PubMed:26187814, ECO:0000305|PubMed:27107174, ECO:0000305|PubMed:27250747, ECO:0000305|PubMed:27250749}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: The microRNA396c negatively regulates GRF4 at the transcriptional level. {ECO:0000269|PubMed:26187814, ECO:0000269|PubMed:26936408, ECO:0000269|PubMed:27107174, ECO:0000269|PubMed:27250747}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036988 | 1e-110 | BT036988.1 Zea mays full-length cDNA clone ZM_BFb0150I14 mRNA, complete cds. | |||
GenBank | EF515840 | 1e-110 | EF515840.1 Zea mays putative growth-regulating factor 1 (GRF1) mRNA, complete cds. | |||
GenBank | KJ727972 | 1e-110 | KJ727972.1 Zea mays clone pUT6086 GRF transcription factor (GRF6) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791920.1 | 0.0 | growth-regulating factor 4-like | ||||
Swissprot | Q6ZIK5 | 1e-161 | GRF4_ORYSJ; Growth-regulating factor 4 | ||||
TrEMBL | A0A2T7FAX5 | 0.0 | A0A2T7FAX5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00789.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2463 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-46 | growth-regulating factor 5 |