PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g07380.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 400aa    MW: 43789 Da    PI: 8.5181
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g07380.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer894.6e-28146200359
                   ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                                   ++rY+eC++NhAa++G+h++DGCgEfmps  e   +  l CaACgCHR+FHRre ++
  Zjn_sc00007.1.g07380.1.sm.mk 146 QCRYRECQRNHAAKMGAHVLDGCGEFMPSAYE--GPGFLACAACGCHRSFHRREAVQ 200
                                   79**************************9444..5999***************9875 PP
2Homeobox15.62.8e-05292347152
                                   TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
                      Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 
                                   +r Rt+ft+eq +++ e+ +    + ++p+ e+     +++g++ r+ kvW +N +
  Zjn_sc00007.1.g07380.1.sm.mk 292 KRFRTKFTAEQKDRMREFAHrvgwRIHKPDSEAVDVFCAQVGVSRRVLKVWMHNNK 347
                                   789***********987655888779****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-15143197IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.4E-24147198IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-24148197IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.554149197IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.1E-29283350IPR009057Homeodomain-like
SuperFamilySSF466892.39E-19284348IPR009057Homeodomain-like
TIGRFAMsTIGR015654.8E-27291347IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MEYNRSSHVE EEEEDDLDEE EEEYDDHHYT TAPAAPVGAP LQQLVPGQHH GPVGSRSSMM  60
DSAAAAFSRP FLPPNSSLVS QVPLPPGFLQ AHRQHQQAHP RRRERAVGTQ HRQLWREQAR  120
NGATRLPVST LAVTTGGVAM GAEPTQCRYR ECQRNHAAKM GAHVLDGCGE FMPSAYEGPG  180
FLACAACGCH RSFHRREAVQ GVAAAAALSP IVAATPNANS SGRVIPLLLA PPRMQTRPHV  240
PASPSSAPAS LTESSSEELR GPAPARPHPP APTSMHQLTV GSASAPPAPS KKRFRTKFTA  300
EQKDRMREFA HRVGWRIHKP DSEAVDVFCA QVGVSRRVLK VWMHNNKHLA KITPQSTSSQ  360
QPTPTPQPPP PPPPQQHRHQ DDQHYPLLPP PHQQQQPQND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-212903481674ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826471.11e-100zinc-finger homeodomain protein 7-like
SwissprotQ8S3Q99e-70ZHD7_ORYSJ; Zinc-finger homeodomain protein 7
TrEMBLA0A0A8Y4W61e-107A0A0A8Y4W6_ARUDO; Uncharacterized protein
STRINGGRMZM2G069365_P011e-97(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134912329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.16e-38homeobox protein 24