PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00007.1.g06260.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YB | ||||||||
Protein Properties | Length: 244aa MW: 26060.8 Da PI: 6.5996 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 172.9 | 3.5e-54 | 28 | 123 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 reqdr++Pianv+rim++vlPa+akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa++ lGf+dyvep Zjn_sc00007.1.g06260.1.sm.mk 28 REQDRLMPIANVIRIMRRVLPAHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYVEP 108 89******************************************************************************* PP NF-YB 83 lkvylkkyrelegek 97 l+vyl++yre+ege Zjn_sc00007.1.g06260.1.sm.mk 109 LSVYLHRYREFEGEA 123 ************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.7E-49 | 21 | 128 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.33E-38 | 30 | 138 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.6E-25 | 34 | 97 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 6.7E-17 | 61 | 79 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 64 | 80 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 6.7E-17 | 80 | 98 | No hit | No description |
PRINTS | PR00615 | 6.7E-17 | 99 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDSIFPAGAT ANGGGGGAQA QQAAPAIREQ DRLMPIANVI RIMRRVLPAH AKISDDAKET 60 IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSRL GFDDYVEPLS VYLHRYREFE 120 GEARGVVGAA RGGGGGVDHH HHHQMFNSLA PATAHHHDMQ VHAAMYGGAA VPPHHGFAAP 180 PPHQGQYMPY PYDTYGGEHA MAAYYGAGAY GPGNGGDGSG GSASHTSQAG GTSSLEHQHP 240 FAYK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-61 | 26 | 118 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243257 | 1e-153 | AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953763.1 | 4e-96 | nuclear transcription factor Y subunit B-2 | ||||
Swissprot | Q84W66 | 2e-63 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A2T7FBI6 | 7e-98 | A0A2T7FBI6_9POAL; Uncharacterized protein | ||||
STRING | Si020091m | 2e-95 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 1e-59 | nuclear factor Y, subunit B6 |