PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00007.1.g05830.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

CO-like

Protein Properties

Length: 816aa MW: 89435.5 Da PI: 9.8473

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00007.1.g05830.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.8	7.1e-06	374	409	9	38
zf-B_box 9 HeekelqlfCedCqqllCedClleeHkg......Ht 38 + + +++++C ++ +lC+ C + H+ H+ Zjn_sc00007.1.g05830.1.am.mk 374 CLRRRARWYCAADDAFLCQACDASVHSAnplarrHE 409 667789********************6566766776 PP
2	CCT	66.8	6.2e-23	752	794	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+ Zjn_sc00007.1.g05830.1.am.mk 752 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKR 794 9****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	4.2E-6	369	413	IPR000315	B-box-type zinc finger
CDD	cd00021	1.88E-5	381	413	No hit	No description
Pfam	PF06203	1.1E-17	752	794	IPR010402	CCT domain
PROSITE profile	PS51017	15.993	752	794	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 816 aa Download sequence Send to blast
MLDRPAHGGA ASLRRLASAI PSEGLTAPRH PQAARSVRRR ELLLPSNPID RRGRARANPG 60 LYEHLPDAGW LGLGTALRST LVGRTAHCGA AAAVRRSPAK WQVNARIWAR AEQDRRVQVL 120 YLRHRIKVPV VSCRGWLRAL YNGSAWDEEE GKRHRSAPSL PRRGEGGNAW SERDAAVGLD 180 FGIVGFEKTQ REGERTHVFG QGHETSLLQA PVQRINTTAQ PNLAYYNTDT GRALRPVTSP 240 RQRWRHRIRP TPGCGTGYTP GWEGARRIVV MCFLEGWTKG WARHPSRGPR KNPGLSNGIS 300 QNWIRYFQRA NCVSDKACAW ALTSTLKVES TLVTAAEVSR KEHLLGQAAL IRRMSTSSTA 360 AAAGAVGGKA ARACLRRRAR WYCAADDAFL CQACDASVHS ANPLARRHER LRLRPTSPPP 420 HESSLDQAIA ARSTSTQRRP VAPAWSRRKA RSRRPQVKSV GQLLSRKLVV PELAAESSEE 480 RKAEEDGSEE TQLLCHRVPS FDRALAELCS PLPVDDAAAA ASSSRDNING AVEDASKQDS 540 VDATSSPVQQ LPDSLSGFGP TDAELREFAA DMEALLGQGM DDSNELDESF YMESLGLMTP 600 AEDDGGRVKM EPHGDISNCD GALGIGRHTD MKSVASAEVL DIDSKIPNCC SPTAVDDEDY 660 EDSFEQKAPM ASNGDAPDAQ FLRRSLDLRL NYEAIIESWG TSPWTDGQRP CVRLDDFWPH 720 HAYHSGEWTP GGGQPPGVGP LTPPRWGTDG CREARVSRYR EKRRTRLFAK KIRYEVRKLN 780 AEKRPRMKGR FVKRPGAGAG GGAAVTPAAP CAVTST

Sequence ? help Back to Top

Protein Sequence Length: 816 aa Download sequence Send to blast

MLDRPAHGGA ASLRRLASAI PSEGLTAPRH PQAARSVRRR ELLLPSNPID RRGRARANPG  60
LYEHLPDAGW LGLGTALRST LVGRTAHCGA AAAVRRSPAK WQVNARIWAR AEQDRRVQVL  120
YLRHRIKVPV VSCRGWLRAL YNGSAWDEEE GKRHRSAPSL PRRGEGGNAW SERDAAVGLD  180
FGIVGFEKTQ REGERTHVFG QGHETSLLQA PVQRINTTAQ PNLAYYNTDT GRALRPVTSP  240
RQRWRHRIRP TPGCGTGYTP GWEGARRIVV MCFLEGWTKG WARHPSRGPR KNPGLSNGIS  300
QNWIRYFQRA NCVSDKACAW ALTSTLKVES TLVTAAEVSR KEHLLGQAAL IRRMSTSSTA  360
AAAGAVGGKA ARACLRRRAR WYCAADDAFL CQACDASVHS ANPLARRHER LRLRPTSPPP  420
HESSLDQAIA ARSTSTQRRP VAPAWSRRKA RSRRPQVKSV GQLLSRKLVV PELAAESSEE  480
RKAEEDGSEE TQLLCHRVPS FDRALAELCS PLPVDDAAAA ASSSRDNING AVEDASKQDS  540
VDATSSPVQQ LPDSLSGFGP TDAELREFAA DMEALLGQGM DDSNELDESF YMESLGLMTP  600
AEDDGGRVKM EPHGDISNCD GALGIGRHTD MKSVASAEVL DIDSKIPNCC SPTAVDDEDY  660
EDSFEQKAPM ASNGDAPDAQ FLRRSLDLRL NYEAIIESWG TSPWTDGQRP CVRLDDFWPH  720
HAYHSGEWTP GGGQPPGVGP LTPPRWGTDG CREARVSRYR EKRRTRLFAK KIRYEVRKLN  780
AEKRPRMKGR FVKRPGAGAG GGAAVTPAAP CAVTST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	762	778	RRTRLFAKKIRYEVRKL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK356535	9e-58	AK356535.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1036A10.
GenBank	AK358370	9e-58	AK358370.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1075C13.
GenBank	JQ791238	9e-58	JQ791238.1 Hordeum vulgare subsp. vulgare cultivar OWB-D K (K) gene, partial cds.
GenBank	JQ791239	9e-58	JQ791239.1 Hordeum vulgare subsp. vulgare cultivar OWB-R K (K) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661075.1	1e-177	zinc finger protein CONSTANS-LIKE 16 isoform X1
TrEMBL	A0A3Q8AVS7	0.0	A0A3Q8AVS7_BAMOL; Constans-like protein
STRING	Si017124m	1e-177	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3283	30	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-48	B-box type zinc finger protein with CCT domain